Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0368
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   4e-21
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              32   0.43 
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          30   1.3  
SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_10401| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        27   9.3  

>SB_10129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 63/156 (40%), Positives = 86/156 (55%)
 Frame = +2

Query: 98  MTEYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKL 277
           M EYW++SAPG+KT QQT++ L +  +   +S  YKFPIP+LKVGTLD LVGLSDDL K+
Sbjct: 1   MAEYWLVSAPGEKTQQQTYEALKS--RMVGMSPVYKFPIPELKVGTLDTLVGLSDDLNKV 58

Query: 278 DTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNI 457
           D+FVE             L +   +   N   +++   TY +  + +    P   S    
Sbjct: 59  DSFVESSVD---------LSNHAAQNDYNEHFDHNGFETYHSEDEDEDGSEPPSSS---- 105

Query: 458 ADIISKQVGQIDADLKVKSFAYNAFKGNLHNFREET 565
              I  QV QI+ DLK KS AYN  KG L +   ++
Sbjct: 106 ---ILTQVSQIEHDLKTKSAAYNNIKGTLASLERKS 138


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 26/78 (33%), Positives = 38/78 (48%)
 Frame = +2

Query: 146 QTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLG 325
           Q  +   NA K  N +V  +  I DLK  T+ QL    D +  LD  V  V  K      
Sbjct: 527 QLSEAQRNAEKFKNDNVRKQKTIDDLK-NTIAQL---EDKINALDNDVREVNTK-----N 577

Query: 326 EVLEDQRDKLHENLMANN 379
           ++LEDQ  ++H++L+  N
Sbjct: 578 DILEDQAKEMHDDLLEAN 595


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -3

Query: 356 GAYRADLQVPLQGTGLPSWSHLRRKYQACPDHLTAPPTD--PKFPP*G 219
           G Y     VP +G G+P  +H    Y A P    APP    P  PP G
Sbjct: 202 GGYAPPPYVPQEGGGIPPQNHPLTNYPAPPPQGYAPPPGGYPGAPPAG 249


>SB_34087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 27/120 (22%), Positives = 58/120 (48%)
 Frame = +2

Query: 116 ISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDTFVEG 295
           ++AP +K+C   +D++ +A   G ++  Y+   P+L++ +L   + +   L   +  +  
Sbjct: 453 LAAPLEKSCTDLYDSIVSAALVGRVTTLYR-TRPELEIVSLFCSI-IDRCLATAEQVLAA 510

Query: 296 VTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIADIISK 475
           V ++ AQ++ +       +LH    AN   L  +L  F  D  K  +    +++AD+  K
Sbjct: 511 VNQRHAQWINK-------ELHSRQRANYKRLRAHLP-FIRDTLKLTVGVVAQHLADLTLK 562


>SB_49316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 119 SAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVG 253
           SA    +   +W T  ++T S + SV +   IP      L QL+G
Sbjct: 219 SASASSSISSSWSTTQSSTFSASKSVKHVLTIPPRTTIILTQLIG 263


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 379 Q*PTHLFDSLPMGHG*VP-HKAESAEYRRHHKQTGRTDRRGSEGQ 510
           Q P    +SLP+G G +P  K+  A   +   QTG TD+ GS GQ
Sbjct: 501 QQPKEEKESLPVG-GIIPIPKSALATRDKAGSQTGSTDQTGSHGQ 544


>SB_10401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 437 LWGT*PCPIGSESNKWVGHCYWPSSFHGAYRADLQVPLQGTGLPSWSHL 291
           +W T     G+ES  WVG C +  SFH  Y  ++ V    TG    S L
Sbjct: 511 VWMTHVSCYGNES--WVGDCAYDRSFHARY-PEVGVECNQTGTTGKSPL 556


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 269 GKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDL 388
           GK D F E V +   +   E+LED++  LHE  +    +L
Sbjct: 886 GKFDPFYEEVNKLQTRI--EILEDEKQALHEEALRIQQNL 923


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,823,847
Number of Sequences: 59808
Number of extensions: 384879
Number of successful extensions: 1178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)