Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0368
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) ...   111   5e-25
At2g28520.1 68415.m03465 vacuolar proton ATPase, putative simila...    31   0.47 
At1g29340.1 68414.m03587 armadillo/beta-catenin repeat family pr...    31   0.62 
At3g59180.1 68416.m06598 hypothetical protein contains a novel d...    28   4.3  
At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containi...    28   4.3  
At3g26030.1 68416.m03242 serine/threonine protein phosphatase 2A...    28   5.7  
At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    28   5.7  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    28   5.7  
At1g60140.1 68414.m06775 glycosyl transferase family 20 protein ...    27   7.6  

>At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) /
           V-ATPase C subunit / vacuolar proton pump C subunit
           (DET3) identical to vacuolar ATP synthase subunit C
           SP:Q9SDS7 from [Arabidopsis thaliana]
          Length = 375

 Score =  111 bits (266), Expect = 5e-25
 Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
 Frame = +2

Query: 101 TEYWVISAPGDKTCQQTWDTLNNATKSGNLSVN-YKFPIPDLKVGTLDQLVGLSDDLGKL 277
           + YWV+S P   +    W+ L       +     Y+F IP+L+VGTLD L+ L DDL K 
Sbjct: 3   SRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLLKS 62

Query: 278 DTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNI 457
           ++FVEGV++K+ + + E LE         L  +   + +YLTRF WD AKYP    L+ +
Sbjct: 63  NSFVEGVSQKIRRQIEE-LERISGVESNALTVDGVPVDSYLTRFVWDEAKYPTMSPLKEV 121

Query: 458 ADIISKQVGQIDADLKVKSFAYNAFKGNLH 547
            D I  QV +I+ DLKV+   YN  +G L+
Sbjct: 122 VDNIQSQVAKIEDDLKVRVAEYNNIRGQLN 151


>At2g28520.1 68415.m03465 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 817

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 23/79 (29%), Positives = 39/79 (49%)
 Frame = +2

Query: 350 KLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIADIISKQVGQIDADLKVKSFAYNA 529
           +LHE+  +NN  + T     Q     +  +  LR I+ II+K     D  LK +   + A
Sbjct: 158 ELHESTYSNNGFIETASLLEQEMNPGHSNQSGLRFISGIINK-----DKLLKFERMLFRA 212

Query: 530 FKGNLHNFREETDRELIDP 586
            +GN+   +  +D E++DP
Sbjct: 213 TRGNMLFNQTTSDEEIMDP 231


>At1g29340.1 68414.m03587 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 729

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +2

Query: 248 VGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMA-NNSDLPTYLTRFQWDMA 424
           +GLSDD+ +    ++  +RK   Y+ +  E  R+  +  L    N  +P+ +    + + 
Sbjct: 162 LGLSDDIREQIELLQRQSRKARLYIDKNDESLRESFYSFLDGFENGKIPSSVDLRMFFVE 221

Query: 425 KYPIK--QSLRNIADIISKQVGQIDADLKVKSFAYNAF 532
           K  I+  +S R+  + + +Q+   D DL+      N F
Sbjct: 222 KLGIRDSKSCRSEIEFLEEQIVNHDGDLEPTGSVINGF 259


>At3g59180.1 68416.m06598 hypothetical protein contains a novel
           domain with similarity to F-box domain;
          Length = 475

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 213 FLTLRWELWISWWGCQMIWAS 275
           FL + W LWI +W C+ I  S
Sbjct: 7   FLQVLWILWIEYWHCKAILLS 27


>At1g09820.1 68414.m01104 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 606

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 157 IPSLLTGLVARGTDHPVFSHFHHKNLKINAVYNKL 53
           I S L G V  G+DH V S FH  ++  N   N +
Sbjct: 120 IRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNSI 154


>At3g26030.1 68416.m03242 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 477

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 323 QGTGLPSWSHLRRKYQACPDHLTAPPTDPK 234
           +G+  PSW HL+  Y+     + +P TDPK
Sbjct: 159 EGSLNPSWPHLQIVYEFLLRIVASPNTDPK 188


>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 3427

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 355 ELIALIFKYLSKVLGYLPGHTFDESIKLAQI 263
           E++A  F Y + +    PGH F   I LA++
Sbjct: 202 EILASFFSYFNNICSSNPGHPFAAGITLAKL 232


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 4144

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 355 ELIALIFKYLSKVLGYLPGHTFDESIKLAQI 263
           E++A  F Y + +    PGH F   I LA++
Sbjct: 202 EILASFFSYFNNICSSNPGHPFAAGITLAKL 232


>At1g60140.1 68414.m06775 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 861

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 167 NATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDTFV 289
           NA + G   V YK+ +      ++++ +G+SDDL +  T V
Sbjct: 437 NAVRDGMNLVPYKYTVCRQGTPSMNKSLGVSDDLPRTSTLV 477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,594
Number of Sequences: 28952
Number of extensions: 274369
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)