Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0366
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   3e-04
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        31   0.27 
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.47 
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.62 
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     29   1.1  
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.4  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 28   1.9  
SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   1.9  
SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   27   3.3  
SB_26402| Best HMM Match : K-box (HMM E-Value=1)                       27   4.4  
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)                 27   4.4  
SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       27   5.8  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   27   5.8  
SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.7  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 24/67 (35%), Positives = 29/67 (43%)
 Frame = -2

Query: 350 HPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSR 171
           H   R R+ SR  R    +R P   R +R P P   S   R RS +PR R+  SR    R
Sbjct: 219 HRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHR 278

Query: 170 RSPHHFH 150
           R     H
Sbjct: 279 RHRSRSH 285


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 347 PSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRN-KPSR 186
           P GR ++ SR     T  R+  T+ N R P P   S   R  S +PR R+  PSR
Sbjct: 534 PVGRTKSPSRSY---TSPRQRRTSPNNRSPPPRRRSPSPRRPSPSPRRRSTSPSR 585


>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 30.3 bits (65), Expect = 0.47
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -2

Query: 323 SRDIRTTTEARRPGTARNTRRPKPTELSVCCR----ERSETPRHRNKPSRPVWSRRSPHH 156
           +RD R T   R P  ++  R P+P++     R    +R   P  + +  RP   +R P H
Sbjct: 191 NRDTRDTINNRHPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRH 250


>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +2

Query: 125 SSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASDAECFSLCLGAGPL 301
           ++ +S+Y      ++++ + ++++Y  +      P S  +A   SD   FSLC+  GPL
Sbjct: 137 NTRLSEYLESRDCEAMDVR-LQRLYEHELVMYRLPESSATATPLSDLFDFSLCMCYGPL 194


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = -2

Query: 329 AVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPH 159
           A+   +  T    RP + R  R P     S     R +T      PSRP  + R PH
Sbjct: 4   ALHNTLTRTRVPSRPCSLRTVRHPHTGTKSTMAYARDDTLTRTRVPSRPSRTVRHPH 60


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 165 TPSRPNR-SRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAP 338
           TPS P+  S    P T    + P+  +      TPS      APG  G P  P+  SAP
Sbjct: 466 TPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPSTPSAP 524


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 351 APLRAVQSREQGHQDHHRGPAPRHSEKH 268
           AP++ +  R +G + HHR     HS+KH
Sbjct: 759 APMQHLGDRREGKRRHHRRHHHSHSQKH 786


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = -1

Query: 354 GAPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 202
           G P R       G  D H GP  RH   H        +RL P   RD   P
Sbjct: 132 GPPDRHTPPDRNGPPDRH-GPPDRHGMDHGRGRGRGRDRLSPPPHRDRGRP 181


>SB_19124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 323 SRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSP 162
           +RD R T   R P  ++  R P+P++     ++R   P  + +  RP   +R P
Sbjct: 151 NRDTRDTINNRHPRPSQQQRYPRPSQ-----QQRYPRPSQQQRHPRPSQQQRHP 199


>SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 270 VSRCAWAPGLCGGPDVPAHGS 332
           ++R  W+  LCGGPD+   GS
Sbjct: 108 ITRSWWSSRLCGGPDINDDGS 128


>SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 9   CRAIPLRPNGLRRNFSPKLFSRLNYVSPR 95
           CR++  R +GL RN SP    RL+Y++ R
Sbjct: 865 CRSVKARKSGLLRNLSP----RLSYITSR 889


>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 306 HHRGPAPRHSEKHSASEADRAER 238
           H  GP+ RHS  H  +E++ A+R
Sbjct: 123 HKEGPSSRHSNVHELNESELAKR 145


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 342 RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAER 238
           R  +SR   H+DH     PR S  HS    D  ER
Sbjct: 205 RRSRSRSLRHEDHDDA-TPRRSRSHSLRHEDEEER 238


>SB_26402| Best HMM Match : K-box (HMM E-Value=1)
          Length = 166

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/73 (20%), Positives = 33/73 (45%)
 Frame = +2

Query: 83  RLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSALSASD 262
           +L +   ++QQ++ S   +       VDS++ +  EK    +  +     SK+  L+++ 
Sbjct: 70  KLGETEYILQQMDSSVKQTAAIKEKDVDSLQQQLAEKDRRIEELNSKLESSKKDVLNSNQ 129

Query: 263 AECFSLCLGAGPL 301
            +C       GP+
Sbjct: 130 EKCLEKFKANGPV 142


>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -1

Query: 303 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 199
           H  P+P HS+          E  LP      PSPE
Sbjct: 741 HSQPSPEHSQPSPEHSLPSQEHSLPSPEHSQPSPE 775


>SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)
          Length = 390

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 341 GRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPR 207
           G+  A +  +  T  ARRP      RRP PT  +   R  + TPR
Sbjct: 11  GQNNATTTGVVPTPRARRPVPTPRARRPNPTTKA---RRPAPTPR 52


>SB_28880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 270 VSRCAWAPGLCGGPDVPAHGSAPPGGVP 353
           V RC    GL GGP+ PAH     G +P
Sbjct: 45  VERCCRFEGLPGGPEDPAHVVVYCGTLP 72


>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 315 HQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 151
           H  HH     RH  KH+A  A R   +      D+P+ +    T  +S +S  FP
Sbjct: 167 HPSHHHVTKSRHQTKHNAKHATRVFSI------DSPNEDSQGKTANIS-DSASFP 214


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 332 RAVSRDIRTTTEARRPGTARNTRR--PKPTELSVCCRERSETPRHRNKPSRPV 180
           R   R  +  T+   P       R  P+PT+     R+R  T R   KP++P+
Sbjct: 257 RPTERPTKKPTKPLLPEVEPEEERATPRPTKAKPTTRKRMPTERPTKKPTKPL 309


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 344  SGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETP 210
            S RC+  ++ ++     ++PG+A    +PK  + S   R+RS +P
Sbjct: 1892 SRRCKTTAKALKKAKGKQKPGSATKKTKPK-QDSSKKKRKRSPSP 1935


>SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 989

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 353 GHPSGRCRAVSRDIRTTTEARRPGTARN 270
           G+P+GR R+V+R IR  T+    G   N
Sbjct: 602 GYPAGRPRSVARAIRKKTQQTGVGIVGN 629


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,814,984
Number of Sequences: 59808
Number of extensions: 231974
Number of successful extensions: 809
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)