Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0366
(354 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12450.1 68417.m01970 expressed protein 33 0.055
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 31 0.22
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 29 0.89
At5g53440.1 68418.m06641 expressed protein 28 2.1
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 27 3.6
At2g07630.1 68415.m00881 hypothetical protein 27 3.6
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 27 4.7
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 4.7
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 27 4.7
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 26 6.3
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 26 6.3
At4g09060.1 68417.m01493 expressed protein 26 6.3
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi... 26 8.3
At4g18160.1 68417.m02698 outward rectifying potassium channel, p... 26 8.3
At4g11610.1 68417.m01859 C2 domain-containing protein contains I... 26 8.3
At3g62800.2 68416.m07056 double-stranded RNA-binding domain (DsR... 26 8.3
At3g62800.1 68416.m07055 double-stranded RNA-binding domain (DsR... 26 8.3
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 26 8.3
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 26 8.3
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 26 8.3
>At4g12450.1 68417.m01970 expressed protein
Length = 277
Score = 33.1 bits (72), Expect = 0.055
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 347 PSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRR 168
PS CR RD+ T +PGT + +P P+ +C R E + + P+R S R
Sbjct: 32 PSYSCRKNVRDVVNT----QPGTVKKNPKPDPSLRRLCSSRRPELDSNSHHPTRRSVSAR 87
Query: 167 S 165
+
Sbjct: 88 A 88
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 288 APGLCGGPDVPAHGSAPPGGVP 353
APG G P P HG PP G P
Sbjct: 73 APGYGGYPPAPGHGGYPPAGYP 94
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 29.1 bits (62), Expect = 0.89
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 282 AWAPGLCGGPDVPAHGSAP 338
+W G CGGPDV A S P
Sbjct: 229 SWGRGFCGGPDVHAPQSLP 247
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -1
Query: 354 GAPLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAE 241
G R+++ E GH+++ R + E+H E +AE
Sbjct: 546 GGARRSIEVEETGHRNNARDYSATEEERHLVDETSQAE 583
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 318 GHQDHHRGPAPRHSEKHSASEADRAERLL 232
GH DH G HS H S +RAE+LL
Sbjct: 157 GH-DHGHGHDHGHSHDHGHSYGERAEQLL 184
>At2g07630.1 68415.m00881 hypothetical protein
Length = 458
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 110 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSA-LSASDAECFS 277
Q L C + +K Y + DS++ + YS + + + P SKRS+ S S A+ FS
Sbjct: 369 QYLVCVENENKRYQMH--DSIDQCSLMLTYSEEPSEATTPSSKRSSDTSISPADNFS 423
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 300 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 199
R P+P H +H + E+LLP + P+ E
Sbjct: 681 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 714
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -2
Query: 299 EARRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 141
E +R + R P S +ER+ P+ ++ +R RR HH SI
Sbjct: 418 ERKRALEIKRDRTPTARATSKDTKERTPVPKSISRDARSSSLRRDAHHREASI 470
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 300 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 199
R P+P H +H + E+LLP + P+ E
Sbjct: 672 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 705
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -2
Query: 353 GHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCR--ERSETPRHRNKPSRPV 180
G R+ SR + + R P ++ + E+S R ERS +PR P P
Sbjct: 199 GRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPA 258
Query: 179 WSRRSP 162
+ SP
Sbjct: 259 LQKASP 264
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -2
Query: 353 GHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSVCCR--ERSETPRHRNKPSRPV 180
G R+ SR + + R P ++ + E+S R ERS +PR P P
Sbjct: 199 GRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPA 258
Query: 179 WSRRSP 162
+ SP
Sbjct: 259 LQKASP 264
>At4g09060.1 68417.m01493 expressed protein
Length = 341
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 293 RRPGTARNTRRPKPTELSVCCRERSE--TPRHRNKPSRPVWS 174
R +A++ +R P +S +R E +P KP PVW+
Sbjct: 290 RNSASAKSNKRKSPKTMSSPVEKRLEFSSPEISRKPLSPVWN 331
>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
histidine kinase AHK2 [Arabidopsis thaliana]
gi|13537196|dbj|BAB40774
Length = 1176
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 116 LNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 232
+ SS S+ Y G G+ +K++ ++ G+ +S PG
Sbjct: 816 MQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPG 854
>At4g18160.1 68417.m02698 outward rectifying potassium channel,
putative (KCO6) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 436
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 238 TLSSVGFGRRVFLAVPGRR-ASVVVLMSLL 324
++++VG+G R F +PGR A++ +L+S L
Sbjct: 310 SVTTVGYGDRAFKTLPGRLFAAIWLLVSTL 339
>At4g11610.1 68417.m01859 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1011
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = -1
Query: 339 AVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLL 232
++ + + H +HH P+H SE R +L+
Sbjct: 193 SLAAEQDNHNEHHHHYVPKHQVDEMRSEPARPSKLV 228
>At3g62800.2 68416.m07056 double-stranded RNA-binding domain
(DsRBD)-containing protein weak similarity to
SP|P19525 Interferon-induced, double-stranded
RNA-activated protein kinase (EC 2.7.1.-) {Homo
sapiens}; contains Pfam profile PF00035:
Double-stranded RNA binding motif
Length = 355
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 4 PRAAQFRCGLTVCAVIFPPSYF 69
P A +FRC +T C F S F
Sbjct: 31 PHAPRFRCNVTFCGQTFQSSEF 52
>At3g62800.1 68416.m07055 double-stranded RNA-binding domain
(DsRBD)-containing protein weak similarity to
SP|P19525 Interferon-induced, double-stranded
RNA-activated protein kinase (EC 2.7.1.-) {Homo
sapiens}; contains Pfam profile PF00035:
Double-stranded RNA binding motif
Length = 355
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 4 PRAAQFRCGLTVCAVIFPPSYF 69
P A +FRC +T C F S F
Sbjct: 31 PHAPRFRCNVTFCGQTFQSSEF 52
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 230 RERSETPRHRNKPSRPVWSRRSPHH 156
R RS +P +R +PS RRSP +
Sbjct: 154 RRRSPSPVYRRRPSPDYTRRRSPEY 178
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 230 RERSETPRHRNKPSRPVWSRRSPHH 156
R RS +P +R +PS RRSP +
Sbjct: 180 RRRSPSPVYRRRPSPDYTRRRSPEY 204
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -2
Query: 293 RRPGTARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHH 156
RR + R P+ R ETPR WSR+ HH
Sbjct: 300 RREASNELNRTPRKQVQKKSALLRLETPRSYKNSRENEWSRQHNHH 345
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,979,184
Number of Sequences: 28952
Number of extensions: 152628
Number of successful extensions: 586
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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