Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0365
         (665 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    31   0.033
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    25   1.6  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   2.1  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    25   2.8  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   2.8  
AY331407-1|AAQ97588.1|  101|Anopheles gambiae agCP14332 protein.       23   8.7  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 31.1 bits (67), Expect = 0.033
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 599 SGVRGVPPSQGEAPQ*TPPSR*GRYRSCRTDPPRRPSPAGMCRIW 465
           + +R +PPS+   P+   P   GR+ SCR+ P RR S +     W
Sbjct: 245 ASIRKIPPSRRN-PRRRSPRSGGRWPSCRSPPARRRSRSTRPTSW 288



 Score = 27.5 bits (58), Expect = 0.40
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +2

Query: 104 RISPGRETPDRNLPHYGPRFPPKGSKGAEPEFRSPRVKQLWDRWR 238
           +I P R  P R  P  G R+P   S  A    RS R    W R R
Sbjct: 249 KIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTRPTS-WPRSR 292


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 464 C*RCHR*THSSVSARCCPCPF 402
           C +CH+  H  +  RC  C F
Sbjct: 339 CQQCHKALHLDIGLRCVVCDF 359


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 260 ERQRRLHERLAHLKELQR 313
           E  R+LH+R  H+K+LQ+
Sbjct: 741 EMTRKLHQRQQHMKKLQQ 758


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 3   RRAPRKELLGAAPSTTCTGTARSRPTTTDLEDS 101
           R   + EL G+ PSTT       RPT  D  D+
Sbjct: 479 RSFTKGELFGSKPSTTTAIQFLGRPTYADRYDA 511


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 274 PPLALPGEQPHVAPPVPQLLHAGRPEL 194
           PP A+PG QP + P  P      RP +
Sbjct: 233 PPGAVPGMQPGMQPRPPSAQGMQRPPM 259


>AY331407-1|AAQ97588.1|  101|Anopheles gambiae agCP14332 protein.
          Length = 101

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 562 RRNELLPVDEAATVPVEQIRHGAHLQPG 479
           RRN   P     T+P+++ R G  ++ G
Sbjct: 13  RRNRTAPARNYDTIPIDRWRVGNRMKEG 40


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,451
Number of Sequences: 2352
Number of extensions: 15554
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)