Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0364
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    29   0.88 
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    26   4.7  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   4.7  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   6.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   6.2  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   8.2  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   8.2  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.2  

>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 381 FLCSTIVSVVYVLCRGYIKCR*FVLEYFI 295
           FLC T V+ +Y+L R YI C     EYFI
Sbjct: 83  FLCLTFVAFLYLLDRLYINC----YEYFI 107


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 281 PVHASIKYSNTNYLHLIYPLHNT*TTETIVEHKN*HPTHDLVHKLDNVTSSRKYVNIAYD 460
           P +  I   N NY++   P     T E+++ H       DL+HK+     S++    A +
Sbjct: 245 PSYHEISVMNPNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPSKRI--SAIE 302

Query: 461 VLMRTF 478
           VL   F
Sbjct: 303 VLTHPF 308


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 506 RLILQKVIFNVLIAETELPLATVLPGRDENVRIHFLRFTYFRKLYSCFLLRTGVKTHYEL 685
           RL +++  F+V++    L  A VLP   E    +F+RF+ +  + S       +  H   
Sbjct: 438 RLEIEQPDFDVVLENLNLQTANVLPKLAEFRNNNFVRFSPYANITS--FRENMINVHLSN 495

Query: 686 TEIYLQDDVNY 718
            +  L+ DVNY
Sbjct: 496 IQCDLK-DVNY 505


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 219 FDLHHRPLTKEMVCKCFAQLFRF 287
           F LHHR    E  C C   +F F
Sbjct: 565 FRLHHRVEAVEAFCACLESMFSF 587


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 648 SFYALVSRRIMSLLRYT 698
           SFY L +R+IMSLLR T
Sbjct: 319 SFYDLHNRKIMSLLRQT 335


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 251 NGV*MLCSIIPVHASIKYSNTNYLHLI 331
           N V +LC II  H + KY +T++  +I
Sbjct: 764 NKVNLLCKIIREHLTSKYGDTHFQAII 790


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 452 AYDVLMRTFKWTRPRKCSRLILQKVIFNVLI 544
           +Y+V++ T++     K  RL L+   FNV +
Sbjct: 486 SYNVMLTTYRLAATSKADRLFLRNQKFNVCV 516


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 505 RTFSRSSPFKCTHQNIIRNINVFTTTCNIVKFMNKIMCGMLILVFYY 365
           R FSR++P KC++Q           T   V F+  IM  +LI V  Y
Sbjct: 114 RCFSRANPIKCSNQ---------VNTQYSVSFLFTIMASVLISVLNY 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,006
Number of Sequences: 5004
Number of extensions: 58207
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)