Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0364
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    29   2.8  
01_01_0088 + 688792-691441,691629-693013                               29   2.8  
07_01_0418 - 3186093-3186437,3187286-3187438,3187541-3188398,318...    28   8.5  

>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
            708462-708702,708783-708857,708932-709017,709451-709523,
            709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 380  N*HPTHDLVHKLDNVTSSRKYVNIAY 457
            N +  HDL+H+L  + SSR+  NI Y
Sbjct: 1007 NHYVMHDLLHELSQIVSSRECANINY 1032


>01_01_0088 + 688792-691441,691629-693013
          Length = 1344

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 380 N*HPTHDLVHKLDNVTSSRKYVNIAY 457
           N +  HDL+H+L  + SSR+  NI Y
Sbjct: 563 NHYVMHDLLHELSQIVSSRECANINY 588


>07_01_0418 -
           3186093-3186437,3187286-3187438,3187541-3188398,
           3188479-3188541
          Length = 472

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 505 RTFSRSSPFKCTHQNII-RNINVFTTTCNIVKFMNKIMCGML 383
           + F      K  H NI   N+ +  + CN ++F+  + CG L
Sbjct: 175 KAFLNLKRLKLEHTNITDENMQILISNCNALEFLGIVDCGKL 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,697
Number of Sequences: 37544
Number of extensions: 323748
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)