Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0364
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42128| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.8  
SB_6998| Best HMM Match : Ribonuclease_T2 (HMM E-Value=8)              29   3.8  
SB_42330| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_42128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 247 KKWCVNALLNYSGSRINKVF*YKLSTFNI 333
           KKWCVN   N+   R+NK+   + + FN+
Sbjct: 40  KKWCVNMFENWRADRVNKITAKESTIFNV 68


>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1565

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +2

Query: 545 AETELPLATVLPGRDENVRIH----FLRFTYFR--KLYSCFLLRTGVKTHYELTEIYLQD 706
           ++ E+PL+  +  +D N   H     ++ T      +Y C ++ +  K +++L  + + D
Sbjct: 505 SDIEIPLSQTVSTKDVNTNQHKLILMIKDTQLAGDAMYKCLMIASNGKQNFKLASVIIYD 564

Query: 707 DVNY 718
           D +Y
Sbjct: 565 DTDY 568


>SB_6998| Best HMM Match : Ribonuclease_T2 (HMM E-Value=8)
          Length = 185

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 250 KWCVNALLNYSGSRINKVF*YKLSTFNI 333
           KWCVN   N   +R+NK+   + + FNI
Sbjct: 41  KWCVNMFENCRTNRVNKIAAKESTIFNI 68


>SB_42330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -2

Query: 600 RTFSSRPGRTVANGSSVSAIRTLKITFCNISREHFLGLVHLNVRIR 463
           RTF +R  R    G+++  +R  +IT C ++    +G+V ++VR++
Sbjct: 7   RTFINRRWRLTNQGNALDVLRAQRITLCIVT----VGIVVVSVRLQ 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,597,459
Number of Sequences: 59808
Number of extensions: 401989
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)