Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0364
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81132-3|CAB03434.1|  365|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z81132-3|CAB03434.1|  365|Caenorhabditis elegans Hypothetical
           protein T26E4.4 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 479 KWTRPRKCSRLILQKVIFNVLIAETELPLAT-VLPGRDENVRIHFLRFTYFRKLYSCFLL 655
           +W  P K ++L  + V+ + L  + +L + T +  G  +   +H      F +  + FL+
Sbjct: 193 EWLAPSKMAKLAAETVLTSEL--KEDLIICTHIRRGDFQTDGVHQPSDPNFTRAATDFLV 250

Query: 656 RTGVKTHYELTEIYLQDDVNY 718
           +   K HY  T +   +DVN+
Sbjct: 251 KHYQKWHYRTTVVVFGNDVNF 271


>AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical
           protein Y15E3A.4 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = +3

Query: 567 LRFFLDATKMYVFISLDLLISGSYIAVSFYALVSRRIMSLL 689
           ++F+ + TKM +F ++ L++SG++  +  Y    +  +SL+
Sbjct: 314 IQFWSEKTKMRIFNTIALMVSGAFFCILGYLPKEQAHLSLV 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,505
Number of Sequences: 27780
Number of extensions: 318587
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)