Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0364
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   6.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.8  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 425 TSSRKYVNIAYDVLMRTFKWTRPRKCSR 508
           TSS    N  +D    + +++R R+CSR
Sbjct: 212 TSSNSLRNRTHDFQHTSSRYSRERRCSR 239


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 84  VGEPSSVSQN-LPPDRNHYVPITYQQTMK 1
           +G P+      +P +R  Y PIT+Q   +
Sbjct: 657 IGSPTPAESTFIPEERRIYSPITFQDVAR 685


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 422 VTSSRKYVNIAYDVLMRTFKWTRPRKCSR 508
           +T   K+V   Y+ + R   W+RPR+ ++
Sbjct: 29  ITGDEKWV--VYNNIKRKRSWSRPRESAQ 55


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 387 C*FLCSTIVSVVYVLC 340
           C F  +TIVS   +LC
Sbjct: 434 CVFFLTTIVSTTVILC 449


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 398  HVWDANSCVLLSF 360
            HVW  N C +L F
Sbjct: 1520 HVWPDNGCPILYF 1532


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 398  HVWDANSCVLLSF 360
            HVW  N C +L F
Sbjct: 1516 HVWPDNGCPILYF 1528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,425
Number of Sequences: 438
Number of extensions: 4480
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)