Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0364
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09710.1 68418.m01125 magnesium transporter CorA-like family ...    28   5.4  
At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protei...    28   7.1  
At4g00780.1 68417.m00108 meprin and TRAF homology domain-contain...    27   9.4  
At3g15560.1 68416.m01972 expressed protein                             27   9.4  

>At5g09710.1 68418.m01125 magnesium transporter CorA-like family
           protein contains Pfam profile PF01544: CorA-like Mg2+
           transporter protein
          Length = 328

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 567 LRFFLDATKMYVFISLDLLISGSYIAVSFYALV 665
           LR +LD T+ Y+    +++I+   + +S Y+LV
Sbjct: 247 LREYLDDTEDYINFQFEVIITAGSVCISVYSLV 279


>At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protein
           similar to ZIS2 [Homo sapiens] GI:4191329; contains Pfam
           profile PF00641: Zn-finger in Ran binding protein and
           others
          Length = 288

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 493 EKMFSADITEGN-F*CPNCGN*TSISYGSSWTRRKCTYSFP 612
           EK    D T  N + CPNCGN  + S+ +    RKC    P
Sbjct: 185 EKSQKRDSTRDNDWTCPNCGN-VNFSFRTVCNMRKCNTPKP 224


>At4g00780.1 68417.m00108 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 299

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 168 LLPVSKFE-SWHSHIRFDFDLHHRPLTK 248
           LL VS+ E  WH+H R +FD++  P ++
Sbjct: 87  LLVVSQLERKWHTHGRDEFDINPEPASE 114


>At3g15560.1 68416.m01972 expressed protein
          Length = 471

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +2

Query: 488 RPRKCSRLILQKVIFNVLIAETELPLATVLPGRDENVRIHFLRFTYFRKLYSCFLLRTGV 667
           + RK SRL+L     ++L+ + +  L+  LPG  E    H     +F + +        +
Sbjct: 160 KARKRSRLLLNDED-DLLLDDRDRNLSLYLPGTSEETSSHKELRVHFEEEHKAAASEAEI 218

Query: 668 KTHYELTE 691
           K H E+ E
Sbjct: 219 KKHCEIEE 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,915
Number of Sequences: 28952
Number of extensions: 281798
Number of successful extensions: 544
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)