Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0362
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   2.6  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   5.9  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   7.8  

>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 454 NELKVSVTRS*NPFKKMYTKKQTVRYIKHKKV 549
           NEL+ S+ +S N F+K++TK  T   ++ ++V
Sbjct: 240 NELRSSIGQSDNGFEKIFTKMFTKDIVRLREV 271


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 560 PPNWTFLCLMYRTVCFLVYIFLKGFYDLVTETFNSFLILIYILIFMKNDMIIW 402
           PP W F  L Y  +    ++ L   + L    F+S +   + L F + + I+W
Sbjct: 121 PPLWFFSFLYYTDIGSTFFVLLAYDFALRKSAFSSSVSCFFSLWFRQTN-IVW 172


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 557 PNWTFLCLMYRTVCFLV 507
           PNW  + +M+  VCFLV
Sbjct: 404 PNWYCIQVMWPVVCFLV 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,173
Number of Sequences: 5004
Number of extensions: 39305
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)