Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0362
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0279 + 21545317-21546192,21547331-21547667,21547795-21547931     29   2.6  
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234...    28   6.0  
02_01_0136 - 975623-975693,975827-975976,976020-976077                 28   6.0  

>02_04_0279 + 21545317-21546192,21547331-21547667,21547795-21547931
          Length = 449

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 569 AIRPPNWTFLCLMYRTVCFLVYIFLKGF 486
           A R   +  +C+++RT+C+L  + +KGF
Sbjct: 196 AYRTAVFFMVCVLFRTICYLQILRMKGF 223


>04_04_0919 -
           29422003-29422267,29422411-29422660,29423163-29423481,
           29423625-29424794,29424879-29425388,29425449-29425607
          Length = 890

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 221 CTFTDIKQLINHRYYTFKSEETLNRQNKLNHTTSLLAFLP 102
           C    +K ++N R +  ++ + +   +      SLLAF+P
Sbjct: 155 CCLAHVKDVVNRRTFLIRAAKKIGDADSYAFAASLLAFIP 194


>02_01_0136 - 975623-975693,975827-975976,976020-976077
          Length = 92

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 199 CLISVKVHKCGKMKQSAGRNFSGSSKKSPEISVN 300
           C+IS+     G   QSAGR + GSS    + S N
Sbjct: 13  CMISLLSDATGSSTQSAGRTYLGSSACMDDCSPN 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,158,656
Number of Sequences: 37544
Number of extensions: 223538
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)