Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0362
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33463| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.7  
SB_6350| Best HMM Match : Acyl_transf_1 (HMM E-Value=0.87)             27   8.2  
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)                 27   8.2  

>SB_33463| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 390

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 74  IFIVQQKDFLAGTRGVKLCDLVYFV 148
           I I +  D++AG+ GV LC LV F+
Sbjct: 110 ILITRNVDWIAGSLGVFLCKLVLFI 134


>SB_6350| Best HMM Match : Acyl_transf_1 (HMM E-Value=0.87)
          Length = 721

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 476 PGHKIPLKKCTPKNKQCDTLNTKKSNWAVL 565
           PG K PL+KCT +     + + +KS+ A L
Sbjct: 299 PGGKAPLRKCTRRAAAAHSTSGEKSDHAAL 328


>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
          Length = 521

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 64  PLSLSARTCTKSSKCCVSF 8
           PLS+SAR  TK  K CV+F
Sbjct: 299 PLSVSARFTTKKIKICVAF 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,449,689
Number of Sequences: 59808
Number of extensions: 274305
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)