Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0362
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   4.1  
Z83109-1|CAB05513.1|  339|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 281 DFLEDPEKLRPALCFIFPHLCTFTDIKQLINHRYYTFKSEETLNRQN 141
           D ++D  KL      +F  LC   + K  INH   T ++E T+N+ N
Sbjct: 99  DSIDDHAKLEAIYNDLFSRLCNLEEEKYDINH--ITTETETTINQLN 143


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 281 DFLEDPEKLRPALCFIFPHLCTFTDIKQLINHRYYTFKSEETLNRQN 141
           D ++D  KL      +F  LC   + K  INH   T ++E T+N+ N
Sbjct: 99  DSIDDHAKLEAIYNDLFSRLCNLEEEKYDINH--ITTETETTINQLN 143


>Z83109-1|CAB05513.1|  339|Caenorhabditis elegans Hypothetical
           protein F44G3.1 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 557 PNWTFLCLMYRTVCFLVYIFLKGFYDLVTETFNSFLILIYIL 432
           P WTFL      + F+V  F+ G   +  ETF    I  Y +
Sbjct: 135 PLWTFLVFANSAIWFIVCYFVNGPTPVKDETFRLEFIRAYCM 176


>Z81124-11|CAB03370.2|  306|Caenorhabditis elegans Hypothetical
           protein T21B4.1 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 557 PNWTFLCLMYRTVCFLVYIF--LKGFYDLVTETFNSFLILIYILIFMKNDMIIWCE 396
           P + FL  +     FL++     + F+   ++T+  F+IL+Y   F+ N  +++ +
Sbjct: 94  PIFNFLLAILALQRFLIFFLPDFEKFFSFKSKTWKVFIILLYFTFFIVNAGMVYAK 149


>Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical
           protein C29F3.6 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -2

Query: 545 FLCLMYRTVCFLVY--IFLKGFYDLVTETFNSFLILIYILIFMKNDMIIWCEVNVMKMIN 372
           + C M     FL    +F+ GF   +   F+   +L + +I +   + +WC +    M N
Sbjct: 64  YFCFMDFLDVFLFQENVFIFGF---LVAVFHDVSVLTHFIISLNRFISVWCPIFYKTMFN 120

Query: 371 LRH 363
           L++
Sbjct: 121 LKY 123


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 482 DLVTETFNSFLILIYILIFMKNDMIIW 402
           DL    F++FL+L+ IL+   N M+I+
Sbjct: 18  DLQWNAFHAFLLLLIILVVFGNTMVIF 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,745
Number of Sequences: 27780
Number of extensions: 219870
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)