Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0361
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        25   5.0  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    24   8.7  

>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 306 SNQTTKQIFPLYNISIDIDISIEVKK 229
           S    KQIFP+Y  +  I + +E KK
Sbjct: 460 SENGEKQIFPVYTTTCYIGLELEKKK 485


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 336 SNRSSSFGAYSNQTTKQIFPLYN 268
           ++RS    A SN  TK+IFP  N
Sbjct: 42  NSRSCRIDAKSNTLTKEIFPKIN 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,274,519
Number of Sequences: 5004
Number of extensions: 18060
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)