Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0360
         (781 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q65XH7 Cluster: Ptative chromosome condensation factor;...    33   6.1  

>UniRef50_Q65XH7 Cluster: Ptative chromosome condensation factor;
           n=3; Oryza sativa|Rep: Ptative chromosome condensation
           factor - Oryza sativa subsp. japonica (Rice)
          Length = 917

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 315 FTAGDN*RHLLGNSGANKQLTPGLFANIQDNSRVRAVCRHQLT 187
           FT GD  +H LG+     +L P   A++ D    R  C H LT
Sbjct: 269 FTWGDGDKHRLGHGDKESRLKPTCVASLIDYDFYRVACGHSLT 311


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,268,184
Number of Sequences: 1657284
Number of extensions: 13270791
Number of successful extensions: 28804
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 27793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28775
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)