Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0360
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   2.3  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   5.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.3  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   5.3  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   7.0  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 142 AGKRLPMSMSARTTPGRACASTLWPLSINLSPVLMPTITPS 20
           A K +P S S   T G  C  +LW L   ++P   PT++ S
Sbjct: 320 AVKWMPGSKSKLATCGDDCVVSLWDLDQPVNPSPAPTLSVS 360


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 377 CRSKS-FLYKGR-CATFNVRYCTLLLATTNAISW 282
           CR K  FLY  R C TF  + C +   TT  I W
Sbjct: 6   CRYKILFLYNLRNCFTFQNQRCLIPYGTTTTIRW 39


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 377 CRSKS-FLYKGR-CATFNVRYCTLLLATTNAISW 282
           CR K  FLY  R C TF  + C +   TT  I W
Sbjct: 6   CRYKILFLYNLRNCFTFQNQRCLIPYGTTTTIRW 39


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 36  GIKTGDKFIDSGHNV-LAHARPGVVRADIDIGNRF 137
           GI+   KFI  G  + +A+  PG    D+D G+RF
Sbjct: 67  GIREYCKFIGPGFLIAVAYIDPGNYSTDLDAGSRF 101


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 638 AFVVLTVLSFFFIFLSYSNNFQCLF*N*PCCYCS 739
           A V+LT++SF  +FL     F C   +    +CS
Sbjct: 198 ADVLLTIISFLGVFLKNLRRFSCPILSYGAVFCS 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,034
Number of Sequences: 5004
Number of extensions: 57687
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)