Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0360
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33...    33   0.19 
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375...    32   0.59 
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    31   1.4  
09_01_0048 + 833872-834122,834255-834314,834818-835112,835775-83...    29   4.1  

>05_01_0048 +
           331155-333077,333208-333354,333540-334087,334481-334616
          Length = 917

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 315 FTAGDN*RHLLGNSGANKQLTPGLFANIQDNSRVRAVCRHQLT 187
           FT GD  +H LG+     +L P   A++ D    R  C H LT
Sbjct: 269 FTWGDGDKHRLGHGDKESRLKPTCVASLIDYDFYRVACGHSLT 311


>01_07_0288 +
           42534552-42534558,42535302-42537280,42537367-42537513,
           42537982-42538526,42538906-42538981,42539357-42539437
          Length = 944

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 315 FTAGDN*RHLLGNSGANKQLTPGLFANIQDNSRVRAVCRHQLT 187
           FT GD  +H LG+     +L P   A++ D    R  C H LT
Sbjct: 294 FTWGDGDKHRLGHGDKEPRLKPTCVASLIDYDFHRIACGHSLT 336


>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 315 FTAGDN*RHLLGNSGANKQLTPGLFANIQDNSRVRAVCRHQLT 187
           FT GD  ++ LG+   + +L P    ++ D +  +AVC H LT
Sbjct: 476 FTWGDGDKYRLGHGDRSSKLKPTCVPSLIDYNFHKAVCGHTLT 518


>09_01_0048 +
           833872-834122,834255-834314,834818-835112,835775-835894
          Length = 241

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 671 KRTKEL*ALQKHKNAYYLFIVKLLFLTSVVKLR-IY*ILFVFINIFLWC 528
           +R K   AL +      LF + +L     +K+   Y ++F+FIN+ +WC
Sbjct: 56  QRLKVPQALSRIDTQGVLFFLGILMSVGRIKISGSYLVIFMFINMLIWC 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,966,934
Number of Sequences: 37544
Number of extensions: 329558
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)