Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0360
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        28   9.8  

>SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 58  LLTVAITYWHTLARV*CALTLTLAIAFPQSSCFKVFNRTSASAR*LVPTHRSD-PRIILN 234
           +L VA+ YW TLA V   + + L   F Q S F+      +S R  V +H  +  + +++
Sbjct: 640 ILCVAVNYWVTLAAVPLLVVVVLLKRFAQRS-FRDLRSLESSLRTPVNSHLVETAQGLIS 698

Query: 235 VREQSGR*LFVGAAI 279
           +R    R  F   +I
Sbjct: 699 IRAYRSRNTFQNCSI 713


>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/57 (38%), Positives = 28/57 (49%)
 Frame = +3

Query: 180 ISALAGAYTPL*PSNYPECSRTVRALVVCWRRYSPRDGVSCRQQ*STVPDVKCCTST 350
           +SAL G Y PL  +     SR V  +   WR  SP  GV CR++     D+  C ST
Sbjct: 401 VSALCGGYMPL-NAFVGFVSRQVDKICQ-WRFVSPLCGVICREK-----DLSICQST 450


>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 684 DRKIKKNERTVSTTKAQKCILFI 616
           D+ IKK +R  +TTK  +C+L +
Sbjct: 256 DKPIKKTDRLTTTTKDDECVLVL 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,803,320
Number of Sequences: 59808
Number of extensions: 423127
Number of successful extensions: 778
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)