Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0360
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    29   4.9  

>Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 641 FVVLTVLSFFFIFLSYSNNFQ 703
           F++ T+LSFFF F+S SN FQ
Sbjct: 103 FILATILSFFF-FVSSSNTFQ 122


>Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 641 FVVLTVLSFFFIFLSYSNNFQ 703
           F++ T+LSFFF F+S SN FQ
Sbjct: 103 FILATILSFFF-FVSSSNTFQ 122


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/48 (37%), Positives = 31/48 (64%)
 Frame = +3

Query: 57  FIDSGHNVLAHARPGVVRADIDIGNRFPAVVLLQGLQSDFSISALAGA 200
           F   G  VL  AR G+V ++ ++ +R P V+ + G++SD +ISA +G+
Sbjct: 99  FDTPGKIVLDSAR-GMVNSNQNM-SRLPRVMAVLGIKSDVTISAFSGS 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,495
Number of Sequences: 27780
Number of extensions: 328372
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)