Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0360
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16720.1 68418.m01958 expressed protein contains Pfam profile...    29   4.6  
At5g50160.1 68418.m06212 ferric reductase-like transmembrane com...    28   6.0  
At2g31350.2 68415.m03830 hydroxyacylglutathione hydrolase, putat...    28   6.0  
At2g31350.1 68415.m03829 hydroxyacylglutathione hydrolase, putat...    28   6.0  
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat...    28   8.0  
At3g22520.1 68416.m02846 expressed protein                             28   8.0  
At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase,...    28   8.0  
At1g14780.1 68414.m01767 expressed protein                             28   8.0  

>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 675

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 621 IVCIFVLL*CLQFFRSFL--FFYLILITFSAFFKINPVATVAPPLFSRFQR 767
           ++ ++  L  L  F  FL  FF   ++ F++FF +  V  + P L   F+R
Sbjct: 19  VILVYAFLEWLLMFFIFLNSFFTYFIVKFASFFGLKQVCLLCPKLDRIFER 69


>At5g50160.1 68418.m06212 ferric reductase-like transmembrane
           component family protein contains Pfam profile PF01794:
           Ferric reductase like transmembrane component
          Length = 728

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
 Frame = +3

Query: 399 VYTSGPAVVDIRL*L---FEIVSLYTIMILFSKTNYTSIITDFAKTTP*KNINKDKQYLI 569
           +  S PA+++  + +   FEI++L   ++  +   Y  +  DF K  P K +N     L 
Sbjct: 92  ITVSRPAIINSFIGIVSCFEILALLLFLLFLAWNFYARVSNDFKKLMPVKTMN-----LN 146

Query: 570 YSQFNHRRQE*KFDNK*IVCIFVLL*CLQFFRSFLFFYLILITFSAFFK 716
             Q  + R   +F      C+ +LL      R    F L+ I F+A  K
Sbjct: 147 LWQLKYYRVATRFGLLAEACLSLLL--FPVLRGLSMFRLLNIEFAASVK 193


>At2g31350.2 68415.m03830 hydroxyacylglutathione hydrolase, putative
           / glyoxalase II, putative similar to glyoxalase II
           isozyme [Arabidopsis thaliana] gi|2570338|gb|AAC49865
          Length = 323

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 18  IDGVIVGIKTGDKFIDSGHNVLAHARPGVVRADIDI 125
           I G+ + +K GDK++ +GH V     PG  +  I +
Sbjct: 153 IPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISL 188


>At2g31350.1 68415.m03829 hydroxyacylglutathione hydrolase, putative
           / glyoxalase II, putative similar to glyoxalase II
           isozyme [Arabidopsis thaliana] gi|2570338|gb|AAC49865
          Length = 324

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 18  IDGVIVGIKTGDKFIDSGHNVLAHARPGVVRADIDI 125
           I G+ + +K GDK++ +GH V     PG  +  I +
Sbjct: 154 IPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISL 189


>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1073

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 315 FTAGDN*RHLLGNSGANKQLTPGLFANIQDNSRVRAVCRHQLT 187
           FT GD  +  LG+     +L P   + + D++  R  C H LT
Sbjct: 464 FTWGDGDKSRLGHGDKEPRLKPTCVSALIDHTFHRVACGHSLT 506


>At3g22520.1 68416.m02846 expressed protein
          Length = 600

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -1

Query: 370 ANRFFTKVDVQHLTSGTVLYCWRQLTPSLGE*RRQQTTNARTVRE 236
           A+RFF+ +++      ++ Y +  L   LG  + +  TN+ T+R+
Sbjct: 473 ADRFFSALELNKAKVASLKYEYSDLKEKLGSIQMEVDTNSETIRQ 517


>At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           [Brassica oleracea] SWISS-PROT:P49676
          Length = 786

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 620 LFIVKLLFLTSVVKLRIY*ILFVFINIFLWCSLGEICDYRSIIS 489
           ++ + LLFL    K + Y    V ++  L C L   C Y +I+S
Sbjct: 3   IYTIVLLFLFHSRKRKFYITTMVSLSFILCCVLVSSCAYATIVS 46


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 214 DPRIILNVREQSGR*LFVGAAIPQEMALVVASSKVQYLTLNVAHRPL*RNDLLRHYLYDV 393
           DP+++    E+ G  +  G ++  +  +VV   K   L           NDLLRH+LYD+
Sbjct: 164 DPQLLARFIERYGTHVITGVSVGGQDVVVVRQDKSSDLD----------NDLLRHHLYDL 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,898,784
Number of Sequences: 28952
Number of extensions: 281056
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)