Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0359
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65800.1 68418.m08279 1-aminocyclopropane-1-carboxylate synth...    29   3.0  
At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR...    28   5.3  

>At5g65800.1 68418.m08279 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           ACC synthases from Arabidopsis thaliana [GI:940370],
           Lycopersicon esculentum [GI:508609], Cucumis sativus
           [GI:3641649]
          Length = 470

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 263 NLYFKMIKLFVYSTSCN*IVSRN*CTYIK-INKRMLCLWNRNLPSEDRIP 409
           +L  K +K FV ST C  ++SR+    +K + K+ +  W   +   DR+P
Sbjct: 418 DLALKRLKTFVESTDCGRMISRSSHERLKSLRKKTVSNWVFRVSWTDRVP 467


>At4g16900.1 68417.m02551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1072

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 368 CLWNRNLPSEDRIPY*LRCL 427
           C+WN+NLP  D +   +RC+
Sbjct: 659 CIWNKNLPGLDYLACLVRCM 678


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,146,842
Number of Sequences: 28952
Number of extensions: 238279
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)