Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0357
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.0  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   4.7  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    26   4.7  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.1  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.1  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -2

Query: 666 STALLFNTTSLMH---PLKPPLTPALGFTTTVESSTPPTNI 553
           S++  +NT+SL+    P   PL+ A   T T  SSTP T++
Sbjct: 271 SSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSV 311



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 648 NTTSLMHPLKPPLTPALGFTTTVESSTPPTNIGVSN 541
           N+T+       PLT     TTT  SSTP +++  +N
Sbjct: 296 NSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSAN 331


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 240 TVLVNPSLATKGSTSKLTHRHRPLSFSPDLLSGSRFLS 353
           T +V+PS+    S      R  P S   DLL G+  ++
Sbjct: 21  TTMVSPSIDVSSSPRPNVERFSPCSTKKDLLEGNNIMT 58


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 660 ALLFNTTSLMHPLKPPLTPALGFTTTVESST-PPTNIGVSNRR 535
           AL+F+    M+P+K PLTP    T      T   T I   NRR
Sbjct: 537 ALIFSLAQGMNPMKMPLTPRRASTGPRPRPTFQLTEIDSPNRR 579


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 636 LMHPLKPPLTPALGFTTTVESSTPPTNI 553
           +M P KPPL+P  G    + S T PTN+
Sbjct: 172 IMSPQKPPLSPFGGSRDRLVSET-PTNM 198


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 188 LVDASRNYSLNIGSLRVVCFGRSRCHRSSGIEIHSLPDLGRV 63
           L + +   SLNI  + + CF  + C  +    I+ +P L  V
Sbjct: 143 LANLAVGLSLNIQEVLIDCFATAACFTTEDTSINPIPTLPSV 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,882
Number of Sequences: 5004
Number of extensions: 48919
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)