Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0357
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    32   0.39 
11_01_0474 - 3666236-3668050                                           28   6.4  
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337...    28   6.4  
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    28   8.5  
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409...    28   8.5  
02_05_1358 - 35909002-35909615,35909753-35909831                       28   8.5  

>02_05_0490 +
           29456825-29457499,29458771-29459057,29460922-29461039,
           29461451-29461972,29462058-29462170,29463033-29463053,
           29463726-29463960,29464218-29464381,29464695-29464776,
           29465077-29465166,29465625-29465858,29466347-29466418,
           29466857-29467000,29467573-29467659,29467940-29468098,
           29469216-29469476,29469789-29469836
          Length = 1103

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 104 SSDDTSTCRSTP-PEVSRCLTSSCGSHPLGGTLSLRLSCC 220
           +S  +STC  TP P +   +TSSC     GG L+ RL CC
Sbjct: 65  ASGTSSTCPLTPSPSLLPAVTSSCVDG--GGALTTRLRCC 102


>11_01_0474 - 3666236-3668050
          Length = 604

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = +2

Query: 26  CAARNHDSSETSLLFLSQAMNVSRFHSSDDTSTCRSTPPEVSRCLTSSCGSHPLGGTLSL 205
           C+A     +ET     + A +V R       S CR  PP  SR   +S  SH  GG   +
Sbjct: 48  CSAAGGSCAETEASCRNSAGHVVRL------SLCREAPPASSRMWYTSSPSHDEGGGPLV 101

Query: 206 RLSCCHR 226
            +   HR
Sbjct: 102 CVVAAHR 108


>08_01_0380 -
           3376475-3377116,3377722-3377919,3378381-3378556,
           3378681-3379703,3380476-3380593
          Length = 718

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
 Frame = -2

Query: 666 STALLFNTTSLM----HPLKPPLTPALGFT----TTVESSTPPTNIGVSNRRLC 529
           ST+++F+  S+M    H  K PL P +G      +TV+  +PP  I  +N+  C
Sbjct: 113 STSVVFSYPSVMMASNHNQKNPLYPGMGSNGSRCSTVKIESPPNKISEANKISC 166


>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 264 ATKGSTSKLTHRHRPLSFSPDLLSGSRFLSGGID 365
           A +G+ +  +   RP SFS  LL+  R + GG+D
Sbjct: 43  AVQGNATMASVLLRPSSFSRPLLTSFRLIGGGLD 76


>03_05_0510 +
           25039408-25039455,25040627-25040641,25040832-25040991,
           25041116-25041192,25041324-25042528,25042537-25042621,
           25043068-25043130,25043207-25043263,25043299-25043361,
           25043560-25043643,25043730-25044320,25044535-25044663
          Length = 858

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = -1

Query: 637 LNASAEAAADAGVRVHYHGGIVDSAHEHRSLEPEAL*LIRYLCSSLTLMNEYTVSGDLFL 458
           L  S ++ + +    ++ GG  +  HE   L P++   I      +  ++ YT S D+ +
Sbjct: 57  LPLSRQSLSSSATHTYHTGGFYEIDHE--KLPPKSP--IHLKSIRVVKVSGYT-SLDVTV 111

Query: 457 FLPMLIALRGYFSFAFKCC 401
             P L+ALR +FS + + C
Sbjct: 112 SFPSLLALRSFFSSSPRSC 130


>02_05_1358 - 35909002-35909615,35909753-35909831
          Length = 230

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 59  SLLFLSQAMNVSRFHSSDDTSTCRSTPPEVSRCLTSSCGSH-PLGGTLSLRLSCCHRSPS 235
           +L ++S  + +    + D+T  C+     ++    ++CG   P    ++ RL  CHR  S
Sbjct: 59  ALQYISDCIGIGIGCAGDNTVACQPPEAHITEVYAANCGVELPTVDVITGRLLGCHRQRS 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,656,805
Number of Sequences: 37544
Number of extensions: 384521
Number of successful extensions: 1086
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)