Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0357
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 51 8e-07
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 38 0.011
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 30 2.1
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 30 2.1
SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46) 29 2.8
SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19) 29 3.7
SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8) 29 3.7
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_9281| Best HMM Match : Lsm_interact (HMM E-Value=6.7) 28 6.5
SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 51.2 bits (117), Expect = 8e-07
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 536 LRFETPMFVGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSNAVD-INSSIKSSNIQEC 706
L P++VGGV + + GV+ GF GCI DV ++ N +D INS +K I++C
Sbjct: 368 LNLALPLYVGGVLNFETIDTDKVGVNRGFKGCISDVAVDDNPIDLINSYVKHRGIEQC 425
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 530 QSLRFETPMFVGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSNAVDI-NSSIKSSNIQEC 706
+SL P+F+GG DD + S F GC+ + L + + + +++ N+ +C
Sbjct: 582 RSLNTPGPIFIGGGDDVETLTYGKYAAS--FRGCVSGIYLQNRKLRVLEDAVQGYNVMQC 639
Query: 707 N 709
+
Sbjct: 640 D 640
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +2
Query: 545 ETPMFVGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSNAVDINSS----IKSSNIQEC 706
+T +F+GGV V + GF+GC+K V++ +D++ + +KS ++EC
Sbjct: 434 KTRLFLGGVPRMRRVTSDAVPYHSGFTGCVKSFVVDGRMLDLSQALGDVVKSRQVEEC 491
Score = 31.5 bits (68), Expect = 0.70
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 617 GFSGCIKDVVLNSNAVDINSSIKS-SNIQECNTY 715
G GC+KD+++ VD+ S + S N++ C+ Y
Sbjct: 864 GLVGCLKDLIVGDVPVDLASEVTSGQNVRPCSAY 897
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/50 (28%), Positives = 30/50 (60%)
Frame = +2
Query: 545 ETPMFVGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSNAVDINSSIKSSN 694
+T +++G + S +N S F+GC++D+ +NS + S+++SS+
Sbjct: 1402 QTKVYMGNLLSSMTELNVELSRSITFNGCVRDIFVNSVEQNFGSAVRSSS 1451
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 560 VGGVDDSTVVVNPNAGVSGGFSGCIKDVVLN 652
+GG+ + V+ G F GCIKD LN
Sbjct: 1154 LGGLAQTGPVIRDQIATDGNFVGCIKDFKLN 1184
>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1049
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +2
Query: 554 MFVGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSNAVDI--NSSIKSSN 694
+++GGV D+ V ++P ++ F G +K+++LN+ + ++ + SI SN
Sbjct: 598 VYIGGVPDN-VTLSPGLPITWCFKGDMKNLILNTRSYELLSDKSIGVSN 645
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = +2
Query: 548 TPMFVGGV--DDSTVVVNPN-AG--VSGGFSGCIKDVVLNSNAV 664
+P+++GG+ D++ V N AG + F GCI+DV ++N +
Sbjct: 1647 SPLYIGGIPLDNNNAVAAANKAGLDIQDTFGGCIRDVTTDTNVL 1690
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 551 PMFVGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSNAVDINSSIKSSNIQE 703
P+ +GGV + + P+ +G F GC++++ N N D+ + +K N E
Sbjct: 1183 PLQIGGVSNPNMDF-PDIPYTG-FKGCVRNIKDNHNLYDLKNPLKVVNAPE 1231
>SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)
Length = 911
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 146 VSRCLTSSCGSHPLGGTLSLRL 211
VSR L S+C SHPLG + R+
Sbjct: 718 VSRSLCSACASHPLGSRVRFRV 739
>SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)
Length = 662
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 47 SSETSLLFLSQAMNVSRFHSSDDTSTCRSTPPEVSRCLTSSCGSHPLGGTLSLRLSCCHR 226
SS + F S M+ S SS + T +TP + + ++CGS+P G ++L +S +
Sbjct: 425 SSMSVQSFSSDEMDTSDGRSSPEAGT-HNTPVSTTSSIRNACGSNP-EGLITLLISGANG 482
Query: 227 SP 232
P
Sbjct: 483 KP 484
>SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)
Length = 252
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 636 LMHPLKPPLT-PALGFTTTVESSTPPTNIGVS 544
L+ PL+P LT P L TT ++ PPT+ G++
Sbjct: 144 LLAPLRPALTAPILSGITTGTATPPPTSSGIT 175
>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 651 FNTTSLMHPLKPPLTPALGFTTTVESSTPP 562
+N+ S H + PP++ L FTT + S +PP
Sbjct: 873 YNSFSPPH-VAPPISTPLSFTTPISSDSPP 901
>SB_9281| Best HMM Match : Lsm_interact (HMM E-Value=6.7)
Length = 318
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -3
Query: 575 RRLRPRTSESRTGGSV 528
RRL+P++S+SRTGG +
Sbjct: 256 RRLKPKSSKSRTGGGI 271
>SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +2
Query: 47 SSETSLLFLSQAMNVSRFHSSDDTSTCRSTPPEVSRCLTSSCGSHP 184
+SE SL +L Q +N F SSDDTS S +S TS G P
Sbjct: 195 TSEESLEYLLQELNKMPFVSSDDTSVESSN--LLSTNQTSGVGMSP 238
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +2
Query: 47 SSETSLLFLSQAMNVSRFHSSDDTSTCRSTPPEVSRCLTSSCGSHP 184
+SE SL +L Q +N F SSDDTS S +S TS G P
Sbjct: 323 TSEESLEYLLQELNKMPFVSSDDTSVESSN--LLSTNQTSGVGMSP 366
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,607,337
Number of Sequences: 59808
Number of extensions: 408147
Number of successful extensions: 1203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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