Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0357
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18810.1 68417.m02777 expressed protein similar to UV-B and o...    32   0.33 
At5g62260.1 68418.m07817 AT hook motif-containing protein contai...    29   2.3  
At2g22500.1 68415.m02669 mitochondrial substrate carrier family ...    28   5.3  

>At4g18810.1 68417.m02777 expressed protein similar to UV-B and
           ozone similarly regulated protein 1 UOS1 [Pisum sativum]
           GI:20339364
          Length = 596

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 560 VGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSNAVDINSSIKSSNIQE 703
           +GGV +S  +V+  AG +GG +G  K +V  +N     +S+++ N  E
Sbjct: 276 MGGVSESNFIVDLTAGENGGPTGIFKGIVSTTNNGGF-TSVRTKNFPE 322


>At5g62260.1 68418.m07817 AT hook motif-containing protein contains
           Pfam PF03479: Domain of unknown function (DUF296);
           contains Pfam PF02178: AT hook motif; similar to AT-Hook
           DNA-Binding Protein SAP1 protein (GI:4165183)
           [Antirrhinum majus]; similar to AT-hook protein 2,
           Arabidopsis thaliana, EMBL:ATAJ4119
          Length = 441

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 228 PLPVTVLVNPSLATKGSTSKLTHRHRPLSFSPDLLSGSRFL 350
           P+P TV    + A+ GS      R RP  ++PD     RFL
Sbjct: 56  PVPTTVTPGSATASTGSDPTKKKRGRPRKYAPDGSLNPRFL 96


>At2g22500.1 68415.m02669 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 313

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 627 PLKPPLTPALGFTTTVESSTPPTNIGV 547
           P++  L PAL F T+   + PP  +GV
Sbjct: 38  PIQTNLRPALAFQTSTTVNAPPLRVGV 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,263
Number of Sequences: 28952
Number of extensions: 283414
Number of successful extensions: 823
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)