Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0356
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804...    32   0.34 
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    29   3.2  
04_04_1129 - 31107892-31110246                                         29   4.2  
08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088...    28   7.4  
04_03_0204 + 12643435-12644001                                         28   7.4  
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822...    27   9.8  

>01_05_0491 -
           22680011-22680125,22680210-22680307,22680392-22680472,
           22680564-22680677,22680757-22680823,22680947-22681017,
           22681099-22681236,22681324-22681530,22681630-22681773,
           22681856-22682017,22682117-22682173,22682256-22682348,
           22682425-22682542,22682678-22682817,22683031-22683590,
           22683703-22683805
          Length = 755

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -1

Query: 321 RRPDNIEQNPHVPNLRDPCICADTRDILIKTKNSEIYLSVGLNRPIPASFLYKLYV 154
           R  D  E N  +P L DP      +++LIK  + ++  S+G  RPI A  +Y+  +
Sbjct: 333 RGVDIHENNSQLPGLNDPEAEKQQQELLIKCISEDLGFSIG--RPIAAYLIYRCLI 386


>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 491 EPVSKKYGPTRGERAEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEP 634
           E  +K+ G   GE+ + +   ++S  + A      KK+K  S   EEP
Sbjct: 473 EKTTKEDGDQEGEKKKKKKKSKESEESPAADADGGKKKKKTSKESEEP 520


>04_04_1129 - 31107892-31110246
          Length = 784

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -1

Query: 579 QAAAPGLSLSECRSSALSPLVGPYFFETGSPSPLRYESGLMLAASSEEFEDKSDDRSSIF 400
           +AA PG   +    S+  PL  P      +   LR+ SG  L+A+      + D    + 
Sbjct: 64  RAAVPGADATILSGSSAHPLPRPAAAARLAALALRFRSGPSLSAALSALPSQPDPALLLL 123

Query: 399 TVSWLPSS 376
             S LP+S
Sbjct: 124 AASSLPAS 131


>08_02_1022 +
           23707993-23708528,23708620-23708706,23708807-23708863,
           23708955-23709261,23709545-23709631,23709720-23709767
          Length = 373

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 635 LVLLPMCFAFFVFYLLSKDRLLLLGYPCQSADL 537
           LVLL    A    Y+L +D LLL+G P   A L
Sbjct: 30  LVLLMFAVALTPTYVLMEDLLLLIGQPADLASL 62


>04_03_0204 + 12643435-12644001
          Length = 188

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 359 CCLDAILCIPRAGGDRITS 303
           CCL A+LC+PRA    + +
Sbjct: 6   CCLVAVLCLPRASASPVAA 24


>08_01_0841 +
           8223768-8223871,8227749-8228745,8228779-8228828,
           8228896-8230396
          Length = 883

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 434 SKINRTIVLRFSLCLGCPARGRRTRCCLDAILCIPR 327
           +++ +  +LR S         RR RCC+D+ L +P+
Sbjct: 628 TQLGKLQLLRASRRTEDSCHNRRNRCCIDSALTVPK 663


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,813,018
Number of Sequences: 37544
Number of extensions: 376663
Number of successful extensions: 1072
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)