Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0356
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)                 28   7.6  

>SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -1

Query: 354 PRRDPMHTARRRRPDNIEQNPHVPNLRDPCICADTRDILIKTKNSEIYLSVGLNRPIP 181
           PR D   T+  R    ++  P +P++  PC  A     L K+      LSVGL +PIP
Sbjct: 30  PRNDTA-TSMSRCDTTVQ--PLLPSISIPCGLAPNGHDLNKSSKKNTPLSVGLTQPIP 84


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -1

Query: 540 SSALSPLVGPYFFETGSPSPLRYESGLMLA-ASSEEFEDKSDDRSSIFTVSWLPSSR*KD 364
           S + SP+  P+     SP P    S       SS    D S + SS  ++S+ PSS    
Sbjct: 532 SISTSPISNPHPSSNPSPHPSSNPSSEPSPNPSSNPSSDPSPNPSSDPSLSFSPSSSSSP 591

Query: 363 SLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPCI 262
           S+ P  + +    R    N  +NP+  +   P +
Sbjct: 592 SVRPSPNLISNPNRNSNSNSNRNPNPSSNPSPSL 625


>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
          Length = 1301

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 503 SKRAHLLHCGTSPG*CWQRRLKNSKINRTIVLR--FSLCLGCPARGR 369
           S    +L C T+P   W+ RL   K  R I+    F++ +G    G+
Sbjct: 561 SDNCKILKCSTNPPILWKSRLSRQKKTRRIIAHVFFAVMIGATQLGQ 607


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,564,079
Number of Sequences: 59808
Number of extensions: 426463
Number of successful extensions: 1137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)