Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0356
         (651 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              28   0.29 
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    24   4.8  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   8.4  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   8.4  

>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 0.29
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 437 NSKINRTIVLRFSLCLGCPARGRRTRCCLDAILCIPRAGGDRITSNRT 294
           N++  R+ V R ++C+ C   G +   C++ I C  +  G  +  +RT
Sbjct: 560 NARDCRSPVDRQNVCIRCGQEGHKAGTCMEEIRC-GKCDGPHVIGDRT 606


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 422 RTIVLRFSLCLGCPARGRRTRCCLDAILCIPRAGGDRI 309
           R+   R +LC+ C   G + R C +   C    G   I
Sbjct: 522 RSTADRQNLCIRCGLTGHKARSCQNEAKCALCGGAHHI 559


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
 Frame = -1

Query: 621 DVLCVFRFL-FTLKGQAAAPGLSLSECRSSALSPLVGPYFFETGSPS-PLRY--ESGLML 454
           +VL +  FL  ++ G    P L +  C+S ++SP+       +  PS P+R   E   +L
Sbjct: 320 NVLLLILFLCVSILGTLITPELWMKNCKSCSISPVSDRSESVSPVPSLPVRSSPEPSPVL 379

Query: 453 AASSEEFEDKSDDRSSIFTVSWLPSSR*KDSLLPRRDPMHTARRRR 316
             S            S+   S L S   + S LP R    ++R+RR
Sbjct: 380 LRSP---TPAKKPLISVAPASKLLSKSLQPSTLPTRPSPKSSRKRR 422


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 366 DSLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPCICA 256
           D  +PRR P + A  RR      N  +   R  C+ A
Sbjct: 258 DGAMPRRKPPNGATSRRQPVYWWNASIKIQRAECVAA 294


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,177
Number of Sequences: 2352
Number of extensions: 14592
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)