Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0356
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48340.1 68418.m05973 expressed protein                             31   0.66 
At3g11200.2 68416.m01359 PHD finger family protein contains Pfam...    30   1.2  
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to...    30   1.5  
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to...    30   1.5  
At2g35880.1 68415.m04405 expressed protein                             30   1.5  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    29   2.7  
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    29   3.5  
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea...    29   3.5  
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr...    28   6.2  
At3g46220.1 68416.m05003 expressed protein                             27   8.2  
At3g44720.1 68416.m04813 prephenate dehydratase family protein s...    27   8.2  

>At5g48340.1 68418.m05973 expressed protein
          Length = 510

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 577 GCCSWAIPVRVPIFCSFPSRWAILFR-NGLTF 485
           G  SW I  R+   C  P  W +LFR NG+ F
Sbjct: 373 GLLSWTIHFRLSEECQTPDSWELLFRENGIEF 404


>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 233

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -2

Query: 641 IILVLLPMCFAFFVFYLLSKDRLLLLGYPCQSADLLL 531
           ++ VLL   F F+VF ++ K+ L L G+P +S ++ L
Sbjct: 14  LLCVLLRFDFNFWVFVVIEKENLCLYGHPNESWEVNL 50


>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 542 RHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPK 649
           R +  D+P ++  P RV ++R  + T +  P LCPK
Sbjct: 509 RANKLDNPKSSELPDRVCRRRPKERTMQLHPYLCPK 544


>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 542 RHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPK 649
           R +  D+P ++  P RV ++R  + T +  P LCPK
Sbjct: 509 RANKLDNPKSSELPDRVCRRRPKERTMQLHPYLCPK 544


>At2g35880.1 68415.m04405 expressed protein
          Length = 432

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 441 QTTLPTSARTRTAMEKVSPFRKSMAQREGKEQKIGTLTGIAQEQQP 578
           Q  L T  ++  A EK    +K  A++ G+E+K   +    +EQ+P
Sbjct: 367 QPKLETQEKSVKAKEKKKKVKKEEAEKRGEEEKATAVAAKPEEQKP 412


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = -1

Query: 549 ECRSSALSPLVGPYFFETGSPSPLRYESGLMLAASSEEFE---DKSDDRSSIFTVSWLPS 379
           +C S AL+P V        + +P++ + GL    SS       D SDDR  +     +P 
Sbjct: 523 QCSSGALNPAVDT---SDDNRTPVQEKKGLPDQCSSGALSPAVDTSDDRPPVSEKKGIPD 579

Query: 378 SR*KDSLLPRRDPMHTARRRRPD 310
                +L+P  D      RR P+
Sbjct: 580 QHSCGALIPAVDISDVFARRSPE 602


>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 390 WLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNL 277
           WL  +R K+SLL +RD      R  P    QN H P++
Sbjct: 259 WLQVARAKNSLLVQRDNAELRYRYHPFRGHQNIHHPSM 296


>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
           identical to vacuolar sorting receptor homolog
           (GP:1737218) [Arabidopsis thaliana]
          Length = 623

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 515 GHTFSKRAHLLHCGTSPG*CWQ 450
           G+T  K +  LHCG + G CW+
Sbjct: 456 GYTHCKASGALHCGINNGGCWR 477


>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
           domains; weak similarity to HPSR2 - heavy chain
           potential motor protein (GI:871048) [Giardia
           intestinalis]
          Length = 702

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 507 SMAQREGKEQKIGTLTGIAQEQQPVL*E*IKNEKRKAHRK 626
           ++AQ  G E K+GT   + +EQ+P +     N KR+  R+
Sbjct: 213 NVAQSTGDEVKVGTSINLEKEQEPKVPVTSTNLKREQDRR 252


>At3g46220.1 68416.m05003 expressed protein
          Length = 530

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 546 CRSSALSPLVGPYFFETGSPSPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 376
           CRS     L   Y +  G+P    +    M+       ED  +  S I ++S LPSS
Sbjct: 4   CRSLGFLKLCSSYRYPDGTPLAAVFIHSSMIEMLDSATEDAIEQNSWIDSLSVLPSS 60


>At3g44720.1 68416.m04813 prephenate dehydratase family protein
           similar to bacterial PheA gene products
          Length = 424

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 589 SQRTGCCSWAIPVRVPIFCSFPSRWAILFRNGLTFS 482
           + R  C S AIP RV + C + S  +  F NG++ S
Sbjct: 17  TSRNKCFSHAIPKRVAVTCGYRSE-SFSFPNGVSVS 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,813
Number of Sequences: 28952
Number of extensions: 294600
Number of successful extensions: 818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)