Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0355
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    29   2.9  
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529...    28   6.6  
06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492...    28   8.7  

>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -1

Query: 486 KIHDSSFKIDIVSIRNSLFYFLKEKNDLRLHLISKKKRLMKFRAYY 349
           +IH+ S + D+V     +  F+ +KNDLRL L+S    + +++ Y+
Sbjct: 385 EIHERSVESDLVLA--CVKQFMMKKNDLRLILMSATADITRYKDYF 428


>07_03_1525 +
           27448257-27448582,27450741-27450973,27451280-27452919,
           27453129-27453575
          Length = 881

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 558 LSNKKNCQIGNSNPIFL*NIQSKIKIHDSSFKIDIVS-IRNSLFYFLKEKNDLRLHLISK 382
           L N  NC +    P F+  +++ I IHD  +     S +RN   +   E  +L L  +S+
Sbjct: 670 LENSHNCFVILKEPEFINKLKNMILIHDDKYIYVAASLLRNMCLHAQPELTELDLKELSQ 729

Query: 381 KKR 373
             R
Sbjct: 730 TLR 732


>06_03_0812 +
           24847716-24847988,24848123-24848221,24848977-24849229,
           24850064-24850174,24850558-24850694,24850821-24850934,
           24851025-24851224,24851366-24851560,24851636-24851795
          Length = 513

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 578 IYWVYNFCQTKKIVK*VIRTLFFCKIYKA 492
           IY +YNF   +KI+  ++  +F+C +  A
Sbjct: 337 IYVIYNFFLVRKIIGHIVTFVFYCLVVPA 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,699,772
Number of Sequences: 37544
Number of extensions: 278796
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)