Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0355
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40260.1 68418.m04884 nodulin MtN3 family protein similar to ...    28   7.3  
At5g07380.1 68418.m00845 hypothetical protein                          28   7.3  
At3g56000.1 68416.m06222 glycosyl transferase family 2 protein s...    28   7.3  
At3g27810.1 68416.m03469 myb family transcription factor (MYB3) ...    27   9.6  

>At5g40260.1 68418.m04884 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 239

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 415 KKRFTSPFNF*EEAAYEISCLLLENYGLPLFH--SFLNFTKSGVNI 284
           KK+    F++    A  ++C+L   YGLP+ H  S L  T +GV +
Sbjct: 35  KKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGL 80


>At5g07380.1 68418.m00845 hypothetical protein 
          Length = 595

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 588 ITDHILG-IQLLSNKKNCQIGNSNPIFL*NIQSKIKIHDSSFKIDIVSIRNSLFYFLKE 415
           +T+H LG   ++ N  + ++GN   +FL  I S  K+H  S ++D   I  +    L E
Sbjct: 279 VTNHELGKYDVIEN--SVKVGNRTTLFLPTIHSLQKLHPVSSQVDFNVIERTNLTSLSE 335


>At3g56000.1 68416.m06222 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 535

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 578 IYWVYNFCQTKKIVK*VIRTLFFCKIYKARLKF 480
           +Y +YNF   +KIV  +   +F+C I  A + F
Sbjct: 354 VYLIYNFFFLRKIVVHIFTFVFYCVILPATVIF 386


>At3g27810.1 68416.m03469 myb family transcription factor (MYB3)
           (MYB21) contains Pfam profile: PF00249 myb-like
           DNA-binding domain ;identical to ATMYB3 GI:2280528 from
           [Arabidopsis thaliana]; identical to cDNA putative
           transcription factor (MYB21) mRNA, partial cds
           GI:3941431
          Length = 226

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +3

Query: 540 NFFCLTKVVYPIYDP**ASYLHTN-DFQYSLYADRTIKIT 656
           N FC        Y P   SY HTN +F Y  Y+   +  T
Sbjct: 154 NVFCTQDQAMETYSPTPTSYQHTNMEFNYGNYSAAAVTAT 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,139
Number of Sequences: 28952
Number of extensions: 262925
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)