Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0354
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    31   0.17 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.93 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   2.8  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   5.0  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   6.6  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 271 YSTII*NEPQGSILGPFLFLIYINDLPSFIES 366
           Y   I   PQGSI+ P L  IY++ L  FIE+
Sbjct: 414 YKYDIVGTPQGSIVSPILANIYLHQLDEFIEN 445


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 328 LIYINDLPSFIESRHEVVLFADDTSLLFK 414
           L+Y+ +  SF+E+ H  VLF D +S  F+
Sbjct: 823 LVYVIENTSFVEASHISVLFEDSSSKAFE 851


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 295 PQGSILGPFLFLIYINDL----PSFIESRHEVVLFADDTSLLFKIKRQ 426
           PQGSIL  FL   Y+ DL     SF + +  V+L   D  L   + ++
Sbjct: 705 PQGSILSSFLCHFYMEDLIDEYLSFTKKKGSVLLRVVDDFLFITVNKK 752


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +1

Query: 358 IESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVHWFRINNLLLNSKKTKCIKFTL 537
           +  R + ++  +  + L    RQL  + E+ND  S +  +      +L++   +C+   L
Sbjct: 184 LNDREKTLMIQEKKNHLIHSLRQLLAFSEINDFPSEIRSYL---EFILSNLDLECLTLCL 240

Query: 538 KCIKPSLNV 564
           K IK  L +
Sbjct: 241 KIIKGILTL 249


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 300 LRFISYYGRIAHRLSSVKLPQSI*YNLPFKSKRM 199
           L    YYG     LSS+ LP+++  ++P KS R+
Sbjct: 195 LNLSRYYGN-TEALSSLPLPRNLSADIPAKSSRL 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,839
Number of Sequences: 5004
Number of extensions: 57085
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)