Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0354
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0003 - 13992276-13992311,13992461-13992598,13992682-139928...    29   5.2  
10_08_0066 + 14610220-14610798,14610928-14611287                       28   9.1  

>10_08_0003 -
           13992276-13992311,13992461-13992598,13992682-13992852,
           13992926-13992989,13993404-13993552,13993700-13993753,
           13993894-13994034,13994134-13994412,13994518-13994743,
           13995328-13995734
          Length = 554

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 121 AIQSLSHLLRHPKRGGGAFV 62
           A+Q++S +L  P+RGGG F+
Sbjct: 17  AVQTISRVLSFPRRGGGGFL 36


>10_08_0066 + 14610220-14610798,14610928-14611287
          Length = 312

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 98  KMTKGLDGGDILSIIPVASIRKCHYSVNSCRE 193
           K++K +D G + +I+ +A    CH    +C E
Sbjct: 243 KLSKHIDAGSVANILALAEQHSCHTLKEACLE 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,718,483
Number of Sequences: 37544
Number of extensions: 321512
Number of successful extensions: 685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)