Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0354
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    54   8e-08
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    42   5e-04
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    42   6e-04
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    37   0.017
Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z74027-4|CAA98423.1|  561|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z74027-3|CAA98422.1|  557|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 27/74 (36%), Positives = 41/74 (55%)
 Frame = +1

Query: 295 PQGSILGPFLFLIYINDLPSFIESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVH 474
           PQG++L P LF IY+ND+ S +  +     FADDT  L+    + +  + +  A+  VV 
Sbjct: 78  PQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTK-LYASTPKTESENNLQSALDAVVD 136

Query: 475 WFRINNLLLNSKKT 516
           W + + L LN  KT
Sbjct: 137 WTKGSKLTLNQSKT 150


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 20/88 (22%), Positives = 49/88 (55%)
 Frame = +1

Query: 271 YSTII*NEPQGSILGPFLFLIYINDLPSFIESRHEVVLFADDTSLLFKIKRQLQVYDEVN 450
           + T++   PQGS++ P LF  Y+ D+P+  +    ++ +ADD S++ + K+  +  ++V 
Sbjct: 526 WHTLLGGVPQGSVISPNLFTFYLKDMPT--QQDTMLISYADDMSIIARDKKIEKAAEKVQ 583

Query: 451 DAISCVVHWFRINNLLLNSKKTKCIKFT 534
             I  +  + +   + ++++K+    F+
Sbjct: 584 LHIDEIAKYLKERGMSISAEKSTVTVFS 611


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 23/74 (31%), Positives = 38/74 (51%)
 Frame = +1

Query: 295  PQGSILGPFLFLIYINDLPSFIESRHEVVLFADDTSLLFKIKRQLQVYDEVNDAISCVVH 474
            PQGS+ GP LF+++IN+L   +     +  FADD  +       +Q      ++I  +V 
Sbjct: 882  PQGSVSGPLLFILFINNLLIDLAPTINISCFADDVKIFHTDPTIIQ------NSIDIIVS 935

Query: 475  WFRINNLLLNSKKT 516
            W ++N L L   K+
Sbjct: 936  WSKLNELPLAPTKS 949


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +1

Query: 295 PQGSILGPFLFLIYINDLPSFIESRHEVVLFADD 396
           P+GS+ GPFLFLI+IN L   +        FADD
Sbjct: 58  PKGSVSGPFLFLIFINSLLLSVPPSISCSAFADD 91


>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 470 TTHEIASFTSS*TCNCRLILNNKDVSSANNTTSCRDSIKLGKSFIYI 330
           TTH + + T+  T +CRL+L +K ++  N+  S    +KL   F Y+
Sbjct: 489 TTHHVINSTTLFTAHCRLMLLSKSLTIQND--SIVRFVKLSNKFAYV 533


>Z74027-4|CAA98423.1|  561|Caenorhabditis elegans Hypothetical
           protein C13G3.3b protein.
          Length = 561

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 156 ILATGIILKISPPSNPLVIFYDTRREEVVLLSRPQHSRNYMMIFFFNIPCP 4
           + +T +   +SPP+NP+   +D   +E  L +   H +     F   + CP
Sbjct: 123 MFSTNLFRPLSPPTNPIGAEFDPDEDEPTLEAAWPHLQLVYEFFLRFLECP 173


>Z74027-3|CAA98422.1|  557|Caenorhabditis elegans Hypothetical
           protein C13G3.3a protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -2

Query: 156 ILATGIILKISPPSNPLVIFYDTRREEVVLLSRPQHSRNYMMIFFFNIPCP 4
           + +T +   +SPP+NP+   +D   +E  L +   H +     F   + CP
Sbjct: 119 MFSTNLFRPLSPPTNPIGAEFDPDEDEPTLEAAWPHLQLVYEFFLRFLECP 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,846,764
Number of Sequences: 27780
Number of extensions: 309610
Number of successful extensions: 756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)