Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0354
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo...    28   7.6  
At1g30780.1 68414.m03763 F-box family protein                          27   10.0 

>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
           similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
           (EPI64 protein) {Homo sapiens}; contains Pfam profile
           PF00566: TBC domain
          Length = 777

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 126 SPPSNPLVIFYDTRREEVVLLSRPQHSRNY 37
           S PSNPLV F + +R+      RPQH + Y
Sbjct: 15  SKPSNPLVAF-EHKRDAYGFPVRPQHVQRY 43


>At1g30780.1 68414.m03763 F-box family protein 
          Length = 482

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 126 SPPSNPLVIFYDTRREEVVLLSRP 55
           +PP NP+++ +D R E++  +  P
Sbjct: 364 TPPMNPVLVCFDVRSEKISFIKAP 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,749,650
Number of Sequences: 28952
Number of extensions: 279502
Number of successful extensions: 632
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)