Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0353
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    25   0.73 
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   6.8  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   6.8  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.0  

>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 351 P*TTKLELITNCFKVSRLSVYALVKPGLLCGSIKLSRITR*VNLKD 488
           P T    L  N   V +   Y LV+      S+KLS+I   VNL D
Sbjct: 21  PDTLAKNLGINSSFVHKEHCYVLVRLARFRDSVKLSKIPNNVNLMD 66


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 273 YYVCSLYGEIPP 238
           Y +C+++G +PP
Sbjct: 18  YKICNIFGIVPP 29


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 273 YYVCSLYGEIPP 238
           Y +C+++G +PP
Sbjct: 18  YKICNIFGIVPP 29


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 16  RRAHVHYYWYCVLLYVSTTILPIS 87
           R+  V  +WY  LLY +   + +S
Sbjct: 277 RKPGVGVFWYARLLYATADFVLLS 300


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 219 RCFK*LLAEFHHTMNTHNNLSH 284
           RC    L+  H  M  HN +SH
Sbjct: 333 RCHPLSLSSDHQAMLHHNPMSH 354


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,714
Number of Sequences: 336
Number of extensions: 3605
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)