Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0353
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    28   1.4  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   5.5  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   7.3  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   7.3  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   7.3  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   9.7  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.7  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    25   9.7  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 387 FKVSRLSVYALVKPGL---LCGSIKLSRITR*VNLKDFLKI 500
           +K++  SVY+ + P L   +   IK+    R VNLKD LKI
Sbjct: 356 WKIANKSVYSNLAPTLKNTIHAQIKIPEFCRSVNLKDQLKI 396


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 480  LKDFLKISSISIQPLESIGNTHTYDINIDYLLRIFDLLIFFSK 608
            L D+ ++  I +  L+S+      + N   ++R+ DL+  FS+
Sbjct: 1113 LNDYERLKKIVVSCLKSLEEARHSENNFQKMVRLIDLIGLFSR 1155


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 403 NRETLKQFVINSNFVVHGKLHKIVVNSI 320
           N++  K+F++N   V+    HK +VN I
Sbjct: 420 NQQPKKEFIVNEILVMKSHHHKNIVNFI 447


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 142 KTQRDKRFSTLERMAASRQKWAGSWYLHIKAHNTSNN 32
           K +R K     E +  S   WA SWY  +++   S N
Sbjct: 431 KVKRTKEECLSEIILLSPDDWASSWYSTVRSQLDSYN 467


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 371 INYELF*SFAVICIRTSQTRPALRIY*TLQDHPL 472
           + +EL     ++ IRTS T P L+ Y   + H L
Sbjct: 525 VTFELENGEVIMTIRTSGTEPKLKFYICARGHSL 558


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = -1

Query: 607 FEKNISRSKILNK*SMFISYVCVFPIDSNGWIEIDEIFRKSFRLT*RVILESLIDPQSRP 428
           F++ +SRSK L     +  Y+ +  I+ NG   + ++++K   +  R++++   D   + 
Sbjct: 62  FKEAVSRSKNLTNDQGYEKYLWLAQINDNGSKAL-KLYQKGVTILERLLIDKGEDADLKK 120

Query: 427 GLTSAY 410
            +  AY
Sbjct: 121 KIQGAY 126


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 294 RFKVFWHRVIEFTTILCSFP*TTKLELITNCFKVSRL 404
           RF++F+ +VIE +  L        ++ IT CF+ S +
Sbjct: 100 RFQLFFEKVIEVSLSLNLSEVVYMIQFITLCFQFSNI 136


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 180 MNSLPYC--L*VSVIKHNVINAFPLSKEWLLRDR 85
           +NS   C  L VS   HN+I A PLS  + LR++
Sbjct: 221 LNSPAACTVLYVSAKNHNLIEALPLSYGYGLREK 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,334
Number of Sequences: 5004
Number of extensions: 55275
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)