Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0353
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600...    30   1.4  
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897...    29   4.3  
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287...    28   7.6  

>04_04_0590 +
           26457514-26457801,26458849-26459325,26459817-26460027,
           26460219-26460376,26460461-26460531,26460707-26460812,
           26460880-26460966,26461591-26462148,26462245-26462308,
           26463352-26463485,26463568-26463621,26464321-26464417,
           26465620-26465825,26465901-26465984,26466265-26466330,
           26466883-26466956,26467664-26467751,26467830-26467928
          Length = 973

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -1

Query: 460 LESLIDPQSRPGLTSA---YTDNRETLKQFVINSNFVVHGKLHKI 335
           L + IDPQ   G+++    Y +++  LKQ++ N   +  GK++K+
Sbjct: 176 LSNEIDPQHISGMSAEIKRYQEDKSILKQYIENDQVIDGGKVYKV 220


>07_03_0333 -
           16888606-16888740,16889463-16889570,16889691-16889790,
           16890473-16890560,16890637-16893253
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 448 IDPQSRPGLTSAYTDNRETLKQFVINSNFVVHGKLHKIVVN 326
           I P+    L SAY DNR +  Q VI   F++ G +H   +N
Sbjct: 767 IAPEEVSQLQSAYNDNRSSSSQAVIAFLFLIAG-MHAAALN 806


>01_06_1315 +
           36226262-36226533,36227946-36228060,36228710-36228752,
           36229953-36230329,36230330-36230481,36230591-36230838,
           36230919-36231047,36231130-36231739,36231842-36232086,
           36232195-36232325
          Length = 773

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 25  HVHYYWYCVLLYVSTTILPISVAKQPFFREWKSVYHVVF 141
           H H+ W  V LY    ILP      PF R +K +  ++F
Sbjct: 364 HAHFSWLRVHLYGPLVILPKRGEGFPFPRPYKELPPIMF 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,259,380
Number of Sequences: 37544
Number of extensions: 306379
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)