Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0353
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)              28   5.9  
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  

>SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 130 DKRFSTLERMAASRQKWAGSWYLHIKAHNTSN 35
           +KR STL  +  S  KW GSW +  K H T N
Sbjct: 91  NKRLSTLVNINISSGKWEGSWAMR-KNHGTGN 121


>SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)
          Length = 398

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 312 HRVIEFTTILCSFP*TTKLELITNCFKVSRLSVYALVKPGLLCGSIK 452
           HR I    + CSF     L L+T C  V+RL +     P L  GS++
Sbjct: 180 HRTISNPILPCSF--VLCLFLVTFCDSVARLGLLVAQDPVLFSGSLR 224


>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -1

Query: 196 TNYLRYELTALLFVSISYKTQRDKRFSTLERMAASRQKWAGSWYLHIKAHNTSNNAHVL 20
           +++LR +        +S K  +++  ++L       QKW   WY H   HN   +A VL
Sbjct: 108 SDFLRSDAVVFHGCQLSRKWIKNEVTTSLIHRKPKNQKWV--WYEHENPHNIGYDARVL 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,930,902
Number of Sequences: 59808
Number of extensions: 398249
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)