Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0353
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 489 FLKISSISIQPLESIGNTHTY 551
           +L  + IS+ PL  +GN HTY
Sbjct: 166 WLGAACISLPPLLIMGNEHTY 186


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 8   KVLVEHMCIITGIVC 52
           KV+VEH  ++ GI+C
Sbjct: 88  KVMVEHGELVMGILC 102


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/32 (21%), Positives = 17/32 (53%)
 Frame = -1

Query: 166 LLFVSISYKTQRDKRFSTLERMAASRQKWAGS 71
           L+ + ++YK  + ++   +E    +  KW G+
Sbjct: 840 LIIIEVAYKKHQIRKQKKMELARHAADKWRGA 871


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 424 LTSAYTDNRETLKQFVINSN 365
           LT AY+    TLK + + SN
Sbjct: 297 LTEAYSSLENTLKYYEVGSN 316


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 577 GFLTY*YFFRNKTNLFFWSQY 639
           G   Y YFF  +T+   W ++
Sbjct: 471 GMKVYYYFFTQRTSTNLWGEW 491


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 87  RNGQDRGTYI*KHTIPVIMH 28
           ++G  + T + KH +P+IM+
Sbjct: 213 KSGYKKPTPVQKHALPIIMN 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,836
Number of Sequences: 438
Number of extensions: 4056
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)