Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0353
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR...    29   3.6  
At5g37710.1 68418.m04540 lipase class 3 family protein / calmodu...    27   8.4  

>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1031

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 333 TILCSFP*TTKLEL-ITNCFKVSRLSVYALVKPGLLCGSIKL 455
           T+ C    T K EL  TNCFK+ + +  A+V+  LL G+  L
Sbjct: 818 TVFCPLN-TPKAELNFTNCFKLGQQAQRAIVQRSLLLGTTLL 858


>At5g37710.1 68418.m04540 lipase class 3 family protein /
           calmodulin-binding heat-shock protein, putative similar
           to almodulin-binding heat-shock protein, common tobacco,
           PIR:T04107; contains Pfam profilesPF03893: Lipase 3
           N-terminal region, PF01764: Lipase
          Length = 436

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 362 RCSRETTQDRGKFDYPMPKHFEPLSRVR*VIMCVH 258
           RC+   + D   +    P+ FEP+ R+  VI+ V+
Sbjct: 22  RCTHVGSDDSATWTSATPEEFEPIPRISRVILAVY 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,744,344
Number of Sequences: 28952
Number of extensions: 269988
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)