Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0349
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 218 8e-58
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.55
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 28 1.7
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 5.2
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 5.2
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 5.2
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 6.8
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 6.8
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.0
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 25 9.0
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 9.0
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 218 bits (532), Expect = 8e-58
Identities = 97/136 (71%), Positives = 119/136 (87%)
Frame = +2
Query: 137 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 316
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 317 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 496
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 497 MFGYATDETEECMPLT 544
MFGYATDET E +PLT
Sbjct: 125 MFGYATDETPEKLPLT 140
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +3
Query: 546 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTL 644
++LAHKLN ++ RR+G W RPD+KTQVT+
Sbjct: 141 ILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTI 173
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.55
Identities = 39/135 (28%), Positives = 61/135 (45%)
Frame = -2
Query: 525 SVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPLDESS*PICL 346
SVSS + +P TSSS+L S + + SS+S TL S L SS P
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSLSTSSIPSTS 244
Query: 345 TVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLIWSHILSG*P 166
+ S +T S + S S+ ++S ++ +S S +S I+S S S P
Sbjct: 245 SSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS---SSSSSSSP 300
Query: 165 SPTDSDVNKNTDPSS 121
+ T S ++ ++ SS
Sbjct: 301 TSTSSTISSSSSSSS 315
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 1.7
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +2
Query: 41 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDA 217
W + K M S T S+D E S+F S+SV E CD+ SD L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692
Query: 218 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 316
K E L+ G+ TS+ ++
Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 187 RPNKRRYSRRAPESGSGRKSCM 252
+P KR+Y+R+AP S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = -1
Query: 763 SDLISQGSLRVSFQSVAGDTNYSMKLSVGTVAPPSKYIFGKVTCVFESGLAHQNSPFRLS 584
SD S+ + + +G T +S+ + + I+G S + F +S
Sbjct: 191 SDTFSEFASHAEYPGFSGLTPFSIHSPTASSVRSCQSIYGSPLSPPNSAFQAEMPYFPIS 250
Query: 583 SAIF*LSLCASTTGQRHAFF 524
AI S C ST ++ FF
Sbjct: 251 PAISCASSCPSTPDEQKNFF 270
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 173 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 277
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 409 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 284
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 305 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 424
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 193 LVAHFVWMTLANRFRCEQKY*SIFHII 113
L+ HFVW + CE+K+ S H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 751 SQGSLRVSFQSVAGDTNYSMKLS-VGTVAPPS 659
S G + +F S++ TNY KLS +G ++P S
Sbjct: 203 SDGDCQRAFASISYPTNYGCKLSNLGFMSPQS 234
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 440 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 321
Q +V V + + CM+ +QSL + HN ++ F+ +L D
Sbjct: 61 QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,516,203
Number of Sequences: 5004
Number of extensions: 79992
Number of successful extensions: 257
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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