Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0349
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 195 4e-50
01_02_0051 - 10655867-10657057 193 1e-49
01_03_0090 - 12347165-12348349 191 5e-49
12_02_0655 + 21588662-21589051 31 1.0
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 31 1.3
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 3.1
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 29 4.1
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 29 5.4
06_03_1153 - 28047125-28047751 28 7.1
02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117 28 7.1
>05_01_0264 + 2030080-2031270
Length = 396
Score = 195 bits (475), Expect = 4e-50
Identities = 90/144 (62%), Positives = 114/144 (79%), Gaps = 2/144 (1%)
Frame = +2
Query: 137 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 316
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANV 66
Query: 317 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 490
DY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 67 DYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 491 GLMFGYATDETEECMPLTRSACTQ 562
G MFGYATDET E MPL+ T+
Sbjct: 127 GHMFGYATDETPELMPLSHVLATK 150
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +3
Query: 549 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTL 644
VLA KL ++ E+R+NG W RPD KTQVT+
Sbjct: 146 VLATKLGARLTEVRKNGTCAWLRPDGKTQVTV 177
>01_02_0051 - 10655867-10657057
Length = 396
Score = 193 bits (471), Expect = 1e-49
Identities = 90/150 (60%), Positives = 116/150 (77%), Gaps = 2/150 (1%)
Frame = +2
Query: 119 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEI 298
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT MV++ GEI
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEI 60
Query: 299 TSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEE 472
T+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH + + EE
Sbjct: 61 TTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 473 VGAGDQGLMFGYATDETEECMPLTRSACTQ 562
+GAGDQG MFGYATDET E MPL+ T+
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATK 150
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +3
Query: 549 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTL 644
VLA KL ++ E+R+NG W RPD KTQVT+
Sbjct: 146 VLATKLGARLTEVRKNGACAWLRPDGKTQVTV 177
>01_03_0090 - 12347165-12348349
Length = 394
Score = 191 bits (466), Expect = 5e-49
Identities = 89/144 (61%), Positives = 111/144 (77%), Gaps = 2/144 (1%)
Frame = +2
Query: 137 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 316
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 317 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 490
DY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH + + EE+GAGDQ
Sbjct: 66 DYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 125
Query: 491 GLMFGYATDETEECMPLTRSACTQ 562
G MFGYATDET E MPL+ T+
Sbjct: 126 GHMFGYATDETPELMPLSHVLATK 149
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 549 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTLPNMYLL-GGATVP 680
VLA KL ++ E+R+NG W RPD KTQVT+ YL GA VP
Sbjct: 145 VLATKLGARLTEVRKNGTCAWLRPDGKTQVTVE--YLNDAGAMVP 187
>12_02_0655 + 21588662-21589051
Length = 129
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +1
Query: 85 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRAPESGSGRK 243
WI QR ++ G W RGS V P +RR SRR P SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 245 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 406
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 122 EDGSVFLFTSESVGEGHPDKM---CDQISDAILDAHLNQDPDAKVACETITKTGMVLLC 289
+DGS +LFTS+ E HP M D+ S+ IL E I K G L C
Sbjct: 765 QDGSEWLFTSKRTDESHPFTMHVNFDKFSEDILVGDELVIDGGMATFEVIEKVGNDLRC 823
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 5/125 (4%)
Frame = +2
Query: 236 DAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCS----- 400
D K + V +CG + S +N + + + G+D S+G CS
Sbjct: 506 DCKPTMSHVNSRNAVEVCGSLQSSSNPIPEPSISNSRNRFGFDGMSQGSAEMDCSEDDDN 565
Query: 401 VMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTRSACTQTQSENC 580
++ L + + N+ + +G+G + L + ++ + C +T Q S++
Sbjct: 566 IVSHLSTTNKPHGGTLGNNQTSDSMGSG-RNLQKEHDSNTHQNCSFVTNKIDMQGISDDK 624
Query: 581 RAQAK 595
R K
Sbjct: 625 RINVK 629
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 245 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 406
+ C +I+K GM+L IT + D+ K V++ KH GY KG +K + M
Sbjct: 109 IVCGSISKVGMLLF---IT--LHTDWGKEVQKASPCKHFGYHAERKGLQFKYSNSM 159
>06_03_1153 - 28047125-28047751
Length = 208
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 139 FVHIGICWRG-SSRQNVRPNKRRYSRRAPESGSGRKSCM*NHN*NRYGA 282
+++ CW+ ++ P Y R P +G GR +H+ + YGA
Sbjct: 106 YIYRSQCWKSLKKKKKPPPPLPLYRPRPPPAGDGRPDVTVHHHHHHYGA 154
>02_01_0788 - 5912821-5913392,5913453-5913953,5914030-5914117
Length = 386
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 554 CTQTQSENCRAQAKWRILVGKTRFKNTGYFAEYVFAW 664
C Q + N A +W +L +T + + G+ Y +AW
Sbjct: 120 CAQAERLNVSASGQWAVLPMQTMYSSNGW-DSYAWAW 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,094,033
Number of Sequences: 37544
Number of extensions: 537115
Number of successful extensions: 1417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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