Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0349
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati...   195   2e-50
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2...   191   4e-49
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1...   191   4e-49
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1...   191   4e-49
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati...   190   9e-49
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    29   2.6  
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t...    28   6.0  
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    28   7.9  
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot...    28   7.9  
At1g54960.1 68414.m06277 NPK1-related protein kinase, putative (...    28   7.9  

>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 2 (Methionine
           adenosyltransferase 2, AdoMet synthetase 2)
           [Catharanthus roseus] SWISS-PROT:Q96552
          Length = 393

 Score =  195 bits (476), Expect = 2e-50
 Identities = 92/144 (63%), Positives = 113/144 (78%), Gaps = 2/144 (1%)
 Frame = +2

Query: 137 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 316
           FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACET TKT MV++ GEIT+KANV
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANV 63

Query: 317 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 490
           DY+++VR+T + IG+  +  G D   C V++ ++QQSP+IA GVH +  +  EEVGAGDQ
Sbjct: 64  DYEQIVRKTCREIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEVGAGDQ 123

Query: 491 GLMFGYATDETEECMPLTRSACTQ 562
           G MFGYATDET E MPLT    T+
Sbjct: 124 GHMFGYATDETPELMPLTHVLATK 147



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = +3

Query: 549 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTLPNMYLLGGATVP 680
           VLA KL  K+ E+R+NG   W RPD KTQVT+  +    GA VP
Sbjct: 143 VLATKLGAKLTEVRKNGTCPWLRPDGKTQVTIEYIN-ESGAMVP 185


>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
           identical to S-adenosylmethionine synthetase 2
           (Methionine adenosyltransferase 2, AdoMet synthetase 2)
           [Arabidopsis thaliana] SWISS-PROT:P17562
          Length = 393

 Score =  191 bits (466), Expect = 4e-49
 Identities = 88/144 (61%), Positives = 111/144 (77%), Gaps = 2/144 (1%)
 Frame = +2

Query: 137 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 316
           FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA +
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATI 63

Query: 317 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 490
           DY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GVH +  +  E++GAGDQ
Sbjct: 64  DYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQ 123

Query: 491 GLMFGYATDETEECMPLTRSACTQ 562
           G MFGYATDET E MPL+    T+
Sbjct: 124 GHMFGYATDETPELMPLSHVLATK 147



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/44 (50%), Positives = 28/44 (63%)
 Frame = +3

Query: 549 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTLPNMYLLGGATVP 680
           VLA K+  ++ E+R+NG   W RPD KTQVT+   Y   GA VP
Sbjct: 143 VLATKIGARLTEVRKNGTCRWLRPDGKTQVTV-EYYNDNGAMVP 185


>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score =  191 bits (466), Expect = 4e-49
 Identities = 90/144 (62%), Positives = 111/144 (77%), Gaps = 2/144 (1%)
 Frame = +2

Query: 137 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 316
           FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATV 63

Query: 317 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 490
           DY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GVH +  +  EE+GAGDQ
Sbjct: 64  DYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGAGDQ 123

Query: 491 GLMFGYATDETEECMPLTRSACTQ 562
           G MFGYATDET E MPL+    T+
Sbjct: 124 GHMFGYATDETPELMPLSHVLATK 147



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = +3

Query: 549 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTLPNMYLLGGATVP 680
           VLA KL  ++ E+R+NG   W RPD KTQVT+   Y   GA VP
Sbjct: 143 VLATKLGARLTEVRKNGTCAWLRPDGKTQVTV-EYYNDKGAMVP 185


>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score =  191 bits (466), Expect = 4e-49
 Identities = 90/144 (62%), Positives = 111/144 (77%), Gaps = 2/144 (1%)
 Frame = +2

Query: 137 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 316
           FLFTSESV EGHPDK+CDQISDA+LDA L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATV 63

Query: 317 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 490
           DY+K+VR+T + IG+     G D   C V++ ++QQSP+IA GVH +  +  EE+GAGDQ
Sbjct: 64  DYEKIVRDTCRAIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKCPEEIGAGDQ 123

Query: 491 GLMFGYATDETEECMPLTRSACTQ 562
           G MFGYATDET E MPL+    T+
Sbjct: 124 GHMFGYATDETPELMPLSHVLATK 147



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 23/44 (52%), Positives = 28/44 (63%)
 Frame = +3

Query: 549 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTLPNMYLLGGATVP 680
           VLA KL  ++ E+R+NG   W RPD KTQVT+   Y   GA VP
Sbjct: 143 VLATKLGARLTEVRKNGTCAWLRPDGKTQVTV-EYYNDKGAMVP 185


>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
           similar to S-adenosylmethionine synthetase 3 (Methionine
           adenosyltransferase 3, AdoMet synthetase 3)
           [Lycopersicon esculentum] SWISS-PROT:P43282
          Length = 390

 Score =  190 bits (463), Expect = 9e-49
 Identities = 89/144 (61%), Positives = 111/144 (77%), Gaps = 2/144 (1%)
 Frame = +2

Query: 137 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 316
           FLFTSESV EGHPDK+CDQISDAILDA L QDP++KVACET TKT MV++ GEIT+ A V
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTAAKV 63

Query: 317 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQ 490
           DY+K+VR T + IG+  +  G D   C+V++ ++QQSP+IA GVH +  +  E++GAGDQ
Sbjct: 64  DYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIGAGDQ 123

Query: 491 GLMFGYATDETEECMPLTRSACTQ 562
           G MFGYATDET E MPLT    T+
Sbjct: 124 GHMFGYATDETPELMPLTHVLATK 147



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 22/44 (50%), Positives = 27/44 (61%)
 Frame = +3

Query: 549 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTLPNMYLLGGATVP 680
           VLA KL  K+ E+R+N    W RPD KTQVT+      GGA +P
Sbjct: 143 VLATKLGAKLTEVRKNKTCPWLRPDGKTQVTV-EYKNDGGAMIP 185


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -1

Query: 610 HQNSPFRLSSAIF*LSLCASTTGQRHAFFCLICCITEHQALVSCPNFLVISVLMHPSSNV 431
           H  S   + S  F    C S     +   CL CC   H+  +  P+ + I+   H  S+V
Sbjct: 128 HPLSLMPIDSVSFTCDACGSVDNSSYPCTCLQCCFIIHRDCIDLPSVISINRHDHRISHV 187


>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
           Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
           II gene enhancer-binding protein)(RIPE3B-binding complex
           3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
           identical to putative helicase (atpc-2 gene) cDNA
           NCBI_gi:11191230
          Length = 639

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/70 (18%), Positives = 40/70 (57%)
 Frame = +2

Query: 167 GHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETV 346
           GHP ++  Q+ D+ LDA + +  ++ +A +   +  M  L G++    + + ++++++ +
Sbjct: 264 GHPARLLPQVLDSALDAQVLKGDNSGLAND--IRKEMKALNGKLLKAKDKNTRRLIQKEL 321

Query: 347 KHIGYDDSSK 376
           + +G ++  +
Sbjct: 322 RTLGKEERKR 331


>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 550 TTGQRHAFFCLICCITEHQALVSCPNFLVIS 458
           T G R  +FCL C    H+A +  P  + I+
Sbjct: 279 TAGDRSPYFCLQCNFMIHRACIDLPRVININ 309


>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
           similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
           nucleotide-exchange protein 2 {Homo sapiens}; contains
           Pfam profile PF01369: Sec7 domain
          Length = 1756

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 230 DPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRE---TVKHIGYDDSSKGFDYKTCS 400
           DP+  +A +T +  G  L C     K+ VD++K+ RE   + ++   D +S G   +T S
Sbjct: 523 DPNPAMASQTASVKGSSLQCLVNVLKSLVDWEKIRREAENSTRNANEDSASTGEPIETKS 582


>At1g54960.1 68414.m06277 NPK1-related protein kinase, putative
           (ANP2) similar to protein kinase [Nicotiana tabacum]
           gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
           protein kinase 2, partial cds GI:2342424
          Length = 596

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 221 LNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDD 367
           L+ + DAK +C+T+++   +L C    +  N + +  V   V H  Y +
Sbjct: 431 LDNNTDAKKSCDTMSEISDILKCKFDENSGNGETETKVSMEVDHPSYSE 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,672,945
Number of Sequences: 28952
Number of extensions: 437753
Number of successful extensions: 1222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)