Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0348
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   1.4  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.6  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    24   7.4  

>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 394 RLTIGRIGYRAPPRVFFSVNVKLPLHHNFR 305
           RL +  IGY   PRVF + NVK P   NF+
Sbjct: 224 RLPLWVIGYSQSPRVFRAANVK-PEVMNFK 252


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 219 IKPVYFVW*QPNFFVR 266
           +KP+YF W   NF +R
Sbjct: 137 VKPIYFGWWPENFLLR 152


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 89  VNLDLLNHSEIQVILIHSYFTEHQRAEPTLSH 184
           V + LL +S + + L+HS    + RA PTL H
Sbjct: 127 VKICLLAYS-VHLFLLHSLRMIYPRARPTLYH 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,687
Number of Sequences: 5004
Number of extensions: 28577
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)