Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0348
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    27   5.5  
11_06_0545 + 24839536-24843421,24843871-24844310                       27   7.2  
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473...    26   9.6  

>11_06_0557 - 24955837-24956214,24957225-24957395,24957576-24957635,
            24958419-24958623,24958710-24958953,24959103-24959394,
            24959734-24960828,24960915-24961409,24961665-24961823,
            24961893-24962387
          Length = 1197

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 305  IRTGDINDNCFTVSNEEIRLLPNKIYWLD 219
            I  G++   CF +S     L P ++YW D
Sbjct: 1095 IEDGNVMVGCFRLSYNYFYLKPGEVYWYD 1123


>11_06_0545 + 24839536-24843421,24843871-24844310
          Length = 1441

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +2

Query: 128 ILIHSYFTEHQRAEPTLSH*FASINYKQSINQA 226
           + +H+ +  HQR++P L +   S+N   +++ A
Sbjct: 688 MFLHALYANHQRSKPELENLLLSLNEFSTVSNA 720


>01_01_0629 -
           4738519-4738607,4738700-4738828,4738921-4739011,
           4739103-4739177,4739529-4739618,4739742-4739840,
           4739934-4739987,4740084-4740131,4740232-4740330,
           4740458-4740541,4740650-4740721,4740812-4740907,
           4741012-4741077,4741148-4741253,4741350-4741501,
           4741634-4741708,4741792-4741912,4742968-4743209,
           4743328-4743381
          Length = 613

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 100 SLKSLGNSSDPHTQLFYGTSKS*TNIIALICV 195
           SLK +G +   HT LF G  ++ T I  LI +
Sbjct: 369 SLKVVGGTLAEHTYLFLGAGEAGTGIAELIAL 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,222,813
Number of Sequences: 37544
Number of extensions: 151712
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)