Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0348
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_27831| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.6e-11)         27   4.2  
SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.5  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_34836| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25)                     27   7.3  
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               27   7.3  
SB_27542| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_32798| Best HMM Match : PufQ (HMM E-Value=9.4)                      26   9.6  

>SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 61  TISSLTSCNCEFRSLKSLGNSS 126
           T  +++SCNC  R+L S GNSS
Sbjct: 263 TWCTVSSCNCSTRTLSSWGNSS 284


>SB_27831| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.6e-11)
          Length = 350

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 240 W*QPNFFVRHSETIIINIARPNLKLWCN---GSLTL-TEKKTRGGARYPIR 380
           W    FFV   +T I  +  PN K+W N   G + L T  K+R   +  +R
Sbjct: 36  WIPDTFFVNSVDTEIHKMISPNKKVWLNLDQGHIMLSTRLKSRATCKMDLR 86


>SB_6164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 46  KILNNTISSLTSCNCEFRSLKSLGNSSDPH 135
           KI NN+I+S TSC  E +SL    N    H
Sbjct: 311 KISNNSINSDTSCVFELQSLNIASNGLKLH 340


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 193  VYKL*TINKSSQYILFGNNLISSFDTVKQLSLISPVLI 306
            +YK+  I+KSS+ +L   +  + FD +  L+ I  V+I
Sbjct: 2870 IYKMIYIDKSSKALLAKTHATTGFDYIVMLNTIENVVI 2907


>SB_34836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +1

Query: 37  IPMKILNNT-ISSLTSCNCEFRSL---KSLGNSSDPHTQLFYGTSKS*TNIIALICVYKL 204
           +P K+L N+ + + TSCNCE   L   +    +S  H      TS S T  +    +Y+L
Sbjct: 54  LPQKLLENSYMGNTTSCNCEVLVLSYKQRCNRNSSGHISYTLNTSISWT--VGRNILYRL 111

Query: 205 -*TINKSSQYILF 240
              ++K   Y +F
Sbjct: 112 SQALDKQYLYYIF 124


>SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25)
          Length = 409

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +1

Query: 37  IPMKILNNT-ISSLTSCNCEFRSL---KSLGNSSDPHTQLFYGTSKS*TNIIALICVYKL 204
           +P K+L N+ + + TSCNCE   L   +    +S  H      TS S T  +    +Y+L
Sbjct: 243 LPQKLLENSYMGNTTSCNCEVLVLSYKQRCNRNSSGHISYTLNTSISWT--VGRNILYRL 300

Query: 205 -*TINKSSQYILF 240
              ++K   Y +F
Sbjct: 301 SQALDKQYLYYIF 313


>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1258

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 110 HSEIQVILIHSYFTEHQRAEPTLSH*FASINYKQSIN 220
           HS +Q+I+++S     + ++ TLS  F   NY ++++
Sbjct: 605 HSGVQIIIVNSRSVRTKSSKRTLSDEFKHHNYDETLS 641


>SB_27542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 37  IPMKILNNT-ISSLTSCNCE 93
           +P K+L N+ + + TSCNCE
Sbjct: 102 LPQKLLENSYMGNTTSCNCE 121


>SB_32798| Best HMM Match : PufQ (HMM E-Value=9.4)
          Length = 140

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -2

Query: 232 YTGLIY*LFIIYRRKLMR*CWFSSLMF--RKIAVYEDHLNFRVI*EI*IHNYMTSMRKL 62
           Y G+I+ +  +++ K+ R C FS++ F  R +A     LN  V+  +   NY   ++++
Sbjct: 33  YNGVIFTIAFVWQNKIPRTCSFSTIWFIARYLAYSTSALNPLVLFAL-NENYRNGLKRV 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,119,584
Number of Sequences: 59808
Number of extensions: 190213
Number of successful extensions: 361
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)