Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0348
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone...    28   2.8  
AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear recep...    28   2.8  
Z68879-7|CAA93088.2|  207|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF010241-1|AAB65419.1|  207|Caenorhabditis elegans glutathione S...    27   3.7  
U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 42 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -2

Query: 346 FSVNVKLPLHHNFRLGRAILMIIVSLCRTKKLGCYQTKYTGLIY 215
           +  NV++   H++R+G+ I+M++  + RT  +  ++TK   L+Y
Sbjct: 300 YEKNVRINEDHSYRVGQ-IIMVLHGIQRTMNM-IHETKEISLVY 341


>AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear receptor
           NHR-42 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -2

Query: 346 FSVNVKLPLHHNFRLGRAILMIIVSLCRTKKLGCYQTKYTGLIY 215
           +  NV++   H++R+G+ I+M++  + RT  +  ++TK   L+Y
Sbjct: 302 YEKNVRINEDHSYRVGQ-IIMVLHGIQRTMNM-IHETKEISLVY 343


>Z68879-7|CAA93088.2|  207|Caenorhabditis elegans Hypothetical
           protein K08F4.11 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 248 LLPNKIYWLDLLIVYNL*TQINAIML 171
           L+ N++ W DL+I  NL T INA +L
Sbjct: 149 LVGNELTWADLVIADNLTTLINAELL 174


>AF010241-1|AAB65419.1|  207|Caenorhabditis elegans glutathione
           S-transferase protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 248 LLPNKIYWLDLLIVYNL*TQINAIML 171
           L+ N++ W DL+I  NL T INA +L
Sbjct: 149 LVGNELTWADLVIADNLTTLINAELL 174


>U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical
           protein C01C4.2 protein.
          Length = 244

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 55  NNTISSLTSCNCEFRSLKSLGNS-SDPHTQ-LFYGTSKS*TNIIALICVYKL*TINKSSQ 228
           NNT     S   E+R+L S  N+   P T  +FY T  S  +II  I  +K   +   + 
Sbjct: 75  NNTGYVEMSKFIEYRTLPSTPNTIRSPSTPPIFYPTYPSPNSIIGTIIEHKSEIVTVGNN 134

Query: 229 YILFGNN 249
           Y+L  +N
Sbjct: 135 YLLVLDN 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,599,395
Number of Sequences: 27780
Number of extensions: 154917
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)